Query= MSMg01no073_f03.b1 MSMg01no073_f03.b1 CHROMAT_FILE:
MSMg01no073_f03.b1 PHD_FILE: MSMg01no073_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:21 2005
(556 letters)
>mm_chr3_83623034_83623994
Length = 961
Score = 994 bits (514), Expect = 0.0
Identities = 545/558 (97%), Gaps = 5/558 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctttgtcctccttccactggagctgggtggtacaatttgataaagagaacttt 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctttgtcctctttccactggagctgggtggtacaatttgataaagagaacttt 263
Query: 64 atagtctccagttttacaaaggaagataacaagaacagcaacaaaaccgagttattgagc 123
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 atagtctccagttttaaaaaggaagataacaagaacagcaacaaaaacgagttattgagc 323
Query: 124 aaatgcataactaccctgtaaaatattatggtgttagtatttcccaagcacctgccatct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaatgcataactaccctgtaaaatattatggtgttagtatttcccaagcacctgccatct 383
Query: 184 cctacccaaccaaaatgccacattcttacttccttctacattgctttttccatagactca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cctacccaaccaaaatgccacattcttacttccttctacattgctttttccatagactca 443
Query: 244 aatctaaagactgcatggatttggagattggatccttgttctatggcctttactatggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatctaaagactgcatggatttggagattggatccttgttctatggcctttactatggaa 503
Query: 304 tatggactttgctgatatctgctcagaccacatggcatctactctaggggtaagaggggt 363
||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 504 tatggactttgctgagatctgctcagaccacatgacatctactctaggggtaagtggggt 563
Query: 364 tttctttgttt-----atttatttaaatggaggaggaagcagccccatcttctacatcag 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttctttgtttgatttatttatttaaatggaggaggaagcagccccatcttctacatcag 623
Query: 419 tcccttcagcactgtcatggttctccagacccattgctccctggagtcacattctatcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tcccttcagcactgtcatggttctccagacccattgctccctggagtcacattctatcaa 683
Query: 479 gaactatttgttgttagtttattagaaaatacatccctagggccaacaagatggctcaat 538
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaactatttgttgttagtttattggaaaatacatccctagggccaacaagatggctcaat 743
Query: 539 ggacaaaggcacttgctg 556
||| ||||||||||||||
Sbjct: 744 ggataaaggcacttgctg 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 961
Length adjustment: 10
Effective length of query: 546
Effective length of database: 951
Effective search space: 519246
Effective search space used: 519246
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_f03.g1 MSMg01no073_f03.g1 CHROMAT_FILE:
MSMg01no073_f03.g1 PHD_FILE: MSMg01no073_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:21 2005
(478 letters)
>mm_chr3_83789570_83790449
Length = 880
Score = 886 bits (458), Expect = 0.0
Identities = 474/480 (98%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 1 tctggattaaatcccttatgttccaaatagctagcttgtttcatgcaacctgagactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctggattaaatcccttatgttccaaatagctagcttgtttcatgcaacctgagactgaa 621
Query: 61 aaatattaaggtgagaatgagcttcactggaaggaagcatcttacaggagcagcgagtgg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 620 aaatattaaggtgagaatgagcttcactggaaggaagcatcgtacaggagcagcgagtgg 561
Query: 121 atggatggtcagtggactggagaagctggatgctttgacgagtagatccatgatagctcc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 atggatggtcagtggactggagaagccggatgctttgacgagtagatccatgatagctcc 501
Query: 181 cacgccagctttcctgatgggcttagtggaattgcttagtgagaaactgttcctgggaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cacgccagctttcctgatgggcttagtggaattgcttagtgagaaactgttcctgggaat 441
Query: 241 tctagaccttatccccggaggttctgatctggggggaccggcgttagttacctttctggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tctagaccttatccccggaggttctgatctggggggaccggcgttagttacctttctggg 381
Query: 301 tgacagaattcctgaacatgttggctaagggtggaaagattagtttgggctcatggcttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgacagaattcctgaacatgttggctaagggtggaaagattagtttgggctcatggcttt 321
Query: 361 agtaatctcattcacgggcggctgggaagc--agagtttgaagggtgtagacatagctgc 418
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 aataatctcattcacgggcggctgggaagcagagagtttgaagggtgtagacatagctgc 261
Query: 419 tcccttgaacagttacctcccagcgaccacttcctaacagtcaccagctttaaactcacc 478
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcccttgaacagttacctcccagtgaccacttcctaacagtcaccagctttaaactcacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 880
Length adjustment: 10
Effective length of query: 468
Effective length of database: 870
Effective search space: 407160
Effective search space used: 407160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
