BAC Information

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BAC

Clone NameMSMg01-073J24
Chromosome3 (Build37)
Map Location 132,842,860 - 132,843,165
singlet/doubletsinglet
Overlap gene9130221D24Rik
Upstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12
Downstream genePpa2, E130014J05Rik, EG620205, LOC100039168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073J24.T7 (MSMg01no073_j24.b1)MSMg01-073J24.TJ (MSMg01no073_j24.g1)
ACCAG296876AG296877
length700761
length of high quality
(start - end)
306 (64 - 369)284 (131 - 414)
definitionCHROMAT_FILE: MSMg01no073_j24.b1 PHD_FILE: MSMg01no073_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:45 2005CHROMAT_FILE: MSMg01no073_j24.g1 PHD_FILE: MSMg01no073_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTATACGACTCCTATATCCAGAGGATCCGCGGAATTCAT
TTTATGTTCCCAGAATCCCCAAGGGCCCGTCGTGATAGGATTGAAACCGG
GCCAATTGATGTTTTAATCCTTTCTGTCCTTCAGGAAGAAATGGAATTAA
AAACTGAGTTTCTGTTGTTCAGAATTTGTTGCACTGAGCTAAGATTATAG
ATAGAATGTAGTATTCGATTCTTGCTAACGGATTTTATTATCTAAATTAG
ATATACAGGATAGTGACCTTGGCAGGTAAAAGTAGAAGTGACAACTTGGG
GGAAAGTCAGCAGAATCTGAAGGAGTTCAGAAATAGCGACATACTTGAGA
GTGTTATTTGCTGACCTTCATGAACATGGAGAACCACAAAGTCCCGGTGC
TGGGTCTATCTTAATTTCCATGTATGACTTCATGCATGGCACCTTGCTTT
ACTCTGTATGTCCTCAAGATGGGTCATACTTTACAGGGATGATGGATAGG
CAAATAAAAGAAAGGAATTAAAGCACTTCATACTGACAAAGTCATGATTG
CACAGCACAATAAAATAATACTGGCAGTGTATGAATCACATCTAATCACC
TACCCTATAACCCGGAAAATGACGAATCTAAAATGTCTTATCCCCAAAGA
TATCTTTCAAATAATTAGCTTTTCGTACATTTATAATAACTCCCATGTTG

GTTTCGTGCGCCTCCTCCCTCCGTCCTTTCTCCTACTTTTTCCCTTTNCN
TTCCTAACTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGATACACT
GAAACTAATAGAAGAGAAAGTGGGGAAGAGCCTTGAACACTCGGGCAAAG
GGGAAAATTTCCTGAACAGAACACCATGGCTTGTGCTGTAAGATCAAGAA
TGGACAAATGGAACCACATAAAATTGCAAAGCTTCTCTGTAAGACAAAGG
ACACTGTCAACAGGACAAATTGGTAACCAACAGATTGGGAAAAGATCTTA
ATCAATCCTACACCTGATAGAGGGCTAATATCCAGTATATACAAAGAACT
CAAGAAGTTAGACTCCATATTATCTTAACCCCCCCACTACAGAATGGGGT
AACCAGGTAAAGAGTTCTCATCTGAGGAACATCAATTGGTCAATACGCCC
CTAATGAAATGTTCAGCATCCTTAGTCATCAGGAAAATGCAAATCAAAAC
ACCCCTGAGATTCCACCTCATACCATTCAGAATGGCTAAAATCATAAACT
CAGGTGACAGCAGATGCTGGCGAGGATGTGGAAAAAGAGGAACACCCTTC
CATTGTTGGCGGTTACTGCAAGCTTATATAACTACTCTGGAAATCATTTT
TGGGGTTCCTCCAAACACTGGACATATTAACCGCTGAGGACTTAGCTATA
CTGTACCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_j24.b1 MSMg01no073_j24.b1 CHROMAT_FILE:
MSMg01no073_j24.b1 PHD_FILE: MSMg01no073_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:45 2005
         (306 letters)



>mm_chr3_132842660_132843365
          Length = 706

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatccccaagggcccgtcgtgataggattgaaaccgggccaattgatgttttaatccttt 60
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 aatccccaagggcccatggtgataggattgaaaccgggccaattgatgttttaatccttt 447

                                                                       
Query: 61  ctgtccttcaggaagaaatggaattaaaaactgagtttctgttgttcagaatttgttgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ctgtccttcaggaagaaatggaattaaaaactgagtttctgttgttcagaatttgttgca 387

                                                                       
Query: 121 ctgagctaagattatagatagaatgtagtattcgattcttgctaacggattttattatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgagctaagattatagatagaatgtagtattcgattcttgctaacggattttattatct 327

                                                                       
Query: 181 aaattagatatacaggatagtgaccttggcaggtaaaagtagaagtgacaacttggggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaattagatatacaggatagtgaccttggcaggtaaaagtagaagtgacaacttggggga 267

                                                                       
Query: 241 aagtcagcagaatctgaaggagttcagaaatagcgacatacttgagagtgttatttgctg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 266 aagtcagcagaaactgaaggagttcagaaatagcgacatacttgagagtgccatttgctg 207

                 
Query: 301 accttc 306
           ||||||
Sbjct: 206 accttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)