XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGCTTCTCACAGGATGCTGATGCTCCCTCAAGGATCTCCTCCAAACCAT
GCTCCTCAGCAGTAAGCCAAAGTTTGCAATTCTCACCTTTCATCTTGTAC
TATCCAACTCTGCAGTACAGTTATATATACATAGACACAGACACAGACAC
ACACACACACACACACACAGACAGACACAGACACACACACACAGACACAC
AAACAGACACACATACAGACACAGACACACACACAGACACAGGCACAGAC
ACAGACACAGACACAGACACAGACACAGACACAGACACAGACACAGGCAT
TGACAACATAGATACAGGTTCAGGCATAGATGCAGATGCAGACATAGATA
TAAAACCCCACAGTTATAACTGATATGCCTTCCTGGAATCATCTTCAGTA
TTTTTGTTATTCCATGGGACATATACATAGGAGTATGTATACTATTCTCT
CTGCCTAGCAAAACTCTCAGATAATAGGAAATTCTCTAAATTCTACTATA
AGGAAAAATGTCCTAATGTGGCATTTTTTAATGCTGTGAAATAATGGAGA
AAAACAATATGTATTTTATCTCAAAATTAACACAATCACCAACATGAATA
ACAGTGTGTGTATAATAATAAAACGGGAACTTTTATATAAATTGAATTTT
TAAAAA

NCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTATTCTATTTT
TAATGCGGTTATTTGATTTTCTGGAGTACAGCTTATTGAGTTCTTAGTAT
ATATTGGACATTAGTCCCCTATCAGGTATAGGATTGGTACAGATCCTTTC
CCAATCTGTTGGTGGGCTTTTTGGCTTATTGAAAGTGCCTTTGACTTACA
GAAGCTTTGCGATTTTATGAGGTCCCATTTGTCCATTCTCAGTCTTAGAG
CACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCGGTGCCCATTTCT
TTGAGACTTTCACCTACTTTCTCCTCTATAAGTGTCAATGTCTCTGGCTT
TATTTGGAGTTCCTTGATCCACTTAGACTTAAGCTTTGTACAAGGAGACA
AGAATGGATCAATTCCCATTCTTCTACATGCTAACCGCCAGTTGTGCCAA
CACCATTATTTGAAAATGCTATCATTTTTTCCACTGGATGGTTTTAGCTC
CCTTGTCAAAGATCAAGTGACTATACGTGTTTGGGTTCATTTCTGGATCT
TCAATTCTATTCCATTGGCCTACCTGTCTGTCCCTGTACCAGCACTATAC
AGTTTTTTTTATCACAATTGCTCTGTTACACAGCTTCAGGTCAGGCATGG
TGATTCCATC

Query= MSMg01no073_l03.b1 MSMg01no073_l03.b1 CHROMAT_FILE:
MSMg01no073_l03.b1 PHD_FILE: MSMg01no073_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:50 2005
         (603 letters)



>mm_chr3_13644385_13645387
          Length = 1003

 Score =  826 bits (427), Expect = 0.0
 Identities = 483/507 (95%), Gaps = 10/507 (1%)
 Strand = Plus / Minus

                                                                        
Query: 97   cctttcatcttgtactatccaactctgcagtacagttatatatacatagacacagacaca 156
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1003 cctttcatcttgtactatccaactctgcagtacagttatatatacacagacacagacaca 944

                                                                        
Query: 157  gacacacacacacacacacacacagacagacacagacacacacacacagacacacaaaca 216
            |||||| ||||| ||||| ||||||||        ||||||||||||||||||| | |||
Sbjct: 943  gacacagacacagacacagacacagac--------acacacacacacagacacagacaca 892

                                                                        
Query: 217  gacacacatacagacacagacacacacacagacacaggcacagacacagacacagacaca 276
            |||||| | ||||||||  |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 891  gacacagacacagacac--acacacacacagacacagacacagacacagacacagacaca 834

                                                                        
Query: 277  gacacagacacagacacagacacagacacaggcattgacaacatagatacaggttcaggc 336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833  gacacagacacagacacagacacagacacaggcattgacaacatagatacaggttcaggc 774

                                                                        
Query: 337  atagatgcagatgcagacatagatataaaaccccacagttataactgatatgccttcctg 396
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773  atagatgcagatgcagacatagatataaaaccccacagttataactgatatgccttcctg 714

                                                                        
Query: 397  gaatcatcttcagtatttttgttattccatgggacatatacataggagtatgtatactat 456
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713  gaatcatcttcagtatttttgttattccatgggacatatacataggagtatgtatactat 654

                                                                        
Query: 457  tctctctgcctagcaaaactctcagataataggaaattctctaaattctactataaggaa 516
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 653  tctctctgcctagcaaaactctcagataataggaaattctctaaattctactataaggta 594

                                                                        
Query: 517  aaatgtcctaatgtggcattttttaatgctgtgaaataatggagaaaaacaatatgtatt 576
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 593  aaatgtcctaatgtggcattttttaatgctatgaaataatggagaaaaacaatatgtatt 534

                                       
Query: 577  ttatctcaaaattaacacaatcaccaa 603
            |||| |||||||||| | |||||||||
Sbjct: 533  ttatttcaaaattaataaaatcaccaa 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 108
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)