BAC Information

Click to search

BAC

Clone NameMSMg01-073P13
Chromosome3 (Build37)
Map Location 105,715,977 - 105,716,389
singlet/doubletsinglet
Overlap geneAdora3
Upstream geneSt7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637
Downstream geneI830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073P13.T7 (MSMg01no073_p13.b1)MSMg01-073P13.TJ (MSMg01no073_p13.g1)
ACCAG297137AG297138
length704709
length of high quality
(start - end)
466 (40 - 505)388 (74 - 461)
definitionCHROMAT_FILE: MSMg01no073_p13.b1 PHD_FILE: MSMg01no073_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:12 2005CHROMAT_FILE: MSMg01no073_p13.g1 PHD_FILE: MSMg01no073_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTCT
TTGTTCTGCCCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGA
GTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCG
ATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATAAAGTC
CCATTTACCAATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCA
GGAATTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCT
CTATAAGTTTCAGAGTCTCTGGTTTTATGTGGAGTTCCTTGATTCATTTA
GATTTGACCCTAGCACAAGGAGATAGGAATGGATCAATTCGCATTCTTCT
ACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAG
GTGTGTGGATTCATCTCTGGGCCTTCAATTCTGTTCTATTGGTCTACTTG
CCTGTCACTATACTAATACCATGCAGTCTTGATCACACTTGCTCTGTANT
ACAGTTCTTATGTCCGGCATGCTGATTCCTACTGAAGCTCTTCTTATTCT
TGAA
CATTATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATAGGTTGTCATTTGCTAATACACCTC
ATTCAGCCTTATTTAATCTATAGAGTCTTCTTTCTAGTCTTGTTCTTGTC
TGCACATTGTGTCAGGGTGTCAGGGGGGCAGGGAGGAGAGAGAGAAATAT
ATATATACATATATATAATGTATATATATATATATATATATATATAGTCA
TTGAGGAGTAGATAATATAATGTAGGTAAAACCCTATCACAATGTAAGCT
GTATACGCTGAACTTCTATGATTTATAGGAAGGTGCCCCCTTTCTCAAGA
AAGGCTGCTGTTGCACAATGCAGAAAAGGAATCTATATCTGGCCCTTGGA
GGAAAGTACCAGCTAGCTCTAGGGTGTAAGAAGGAGCATCCAGCTTAAAC
TTGAGAATTTAATGTGGTTCAGGAATTTACATTGTCATAGCTAGCGTTCA
GAACATATGCATCTATCAGGAACCAGGAGAAGCTGCAGCTGCTACTGCTC
GAAAAGATCTACTTGCTGCGAAGTCCCAGTTTTATTCCGAAAAGCTTTCT
ATTATCCGGAAGCTCCAGCCCTGTATGCTGAAAGCTTCACTCATGGATTC
TAGCTTGTCGACATCCATGCTTTTGACAGACAGATACTCTGGCCTCACTC
TCCACCGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_p13.g1 MSMg01no073_p13.g1 CHROMAT_FILE:
MSMg01no073_p13.g1 PHD_FILE: MSMg01no073_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:12 2005
         (388 letters)



>mm_chr3_105715802_105716589
          Length = 788

 Score =  605 bits (313), Expect = e-177
 Identities = 376/421 (89%), Gaps = 41/421 (9%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataggttgtcatttgctaatacacctcattcagccttatttaatctatagagtcttcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 ataggttgtcatttgctaatacacctcattcagccttatttaatctatagagtcttcttt 235

                                                                       
Query: 61  ctagtcttgttcttgtctgcacattgtgtcagggtgtcaggggggcagggag--gagaga 118
           |||||||||||||||||||||||||        |||||||||||||||||||  ||||||
Sbjct: 236 ctagtcttgttcttgtctgcacatt--------gtgtcaggggggcagggaggagagaga 287

                                                                       
Query: 119 gagaa--------------atatatatatacatatatataa----tgtatatatata--- 157
           |||||              ||||||||||| ||||||||||    ||||||||||||   
Sbjct: 288 gagaaatatatatatatatatatatatatatatatatataaaatgtgtatatatatatat 347

                                                                       
Query: 158 ----------tatatatatatatatagtcattgaggagtagataatataatgtaggtaaa 207
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaataaaatgtatatatatatatatagtcattgaggagtagataatataatgtaggtaaa 407

                                                                       
Query: 208 accctatcacaatgtaagctgtatacgctgaacttctatgatttataggaaggtgccccc 267
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 408 accctatcacaatgtaagctgtatacgctgaacttctatgaattagaggaaggtgccccc 467

                                                                       
Query: 268 tttctcaagaaaggctgctgttgcacaatgcagaaaaggaatctatatctggcccttgga 327
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 468 tttctcaagaaaggctgctgttgcacaatgcagaaaagcaatctatatctggcccttgga 527

                                                                       
Query: 328 ggaaagtaccagctagctctagggtgtaagaaggagcatccagcttaaacttgagaattt 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ggaaagtaccagctagctctagggtgtaagaaggagcatccagcttaaacttgagaattt 587

            
Query: 388 a 388
           |
Sbjct: 588 a 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 115
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)