BAC Information

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BAC

Clone NameMSMg01-074D14
Chromosome3 (Build37)
Map Location 9,179,675 - 9,179,816
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633072, LOC545500, LOC620966, Stmn2, Hey1, LOC100039504, Mrps28, Tpd52, LOC100041389, LOC667886
Downstream geneZbtb10, Zfp704, Pag1, LOC621504, Fabp5, LOC100041480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074D14.T7 (MSMg01no074_d14.b1)MSMg01-074D14.TJ (MSMg01no074_d14.g1)
ACCAG297330AG297331
length6921,191
length of high quality
(start - end)
142 (74 - 215)---
definitionCHROMAT_FILE: MSMg01no074_d14.b1 PHD_FILE: MSMg01no074_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:31 2005CHROMAT_FILE: MSMg01no074_d14.g1 PHD_FILE: MSMg01no074_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAGGAT
CCGCGGAATTCTTCTTCCCCTATAGCTTATTGCAGCCACGTATTTAGAGA
CTGTCACTCCTGGTAGGCTTCCCCATTACAAAACACACCAGGACTATTTA
TTTCAAAATGACAATGTGTTTACTCTTCTGAGTGGTTAAATATCCCCACA
TATTTCTCTGTGTGGTTAATTGCATAATTTCTAACGTGTTAAGTTTTTCA
AAAACTACTTCCCTGTCCCCAATATCTCTCAACGTTAGTCAAAAATCCGA
CTTCTGTTTGCCACCGTCTTTTGTAAAGTTATCATCATAAGGAATCAAGG
GACCTTTCTAATTATCTAGGGACTGTCCAGTGAATGTTAGCTTTACATTT
TGTTAAATGTCTTCCCCTGTTCCCTGAACAAGAAAGTCCATTCTTTTTCG
AACGGGGTTCCCCGCCTTCTAATGGTTGAACTTTCTTAAAACTCCTTCTT
ATTGTTGTATAAAATTCCCGAATCTATTTGCCGCTAATTTATAAGATGTA
AATTTTGCCTTGATATTCTTAAGGGCAAATAACTGGGGTGTTTTCCCCAA
GGGCCCTAAGTTACCCCCCTTTTTAAAAATGCTTCTTTTTAACCCCCATA
AATTTTTCTCCGCAACCCCACCCCCACGCTTTTATTAAAATT
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCNCCCNCCCCCC
NCCCCCCCCNNCCCNNNCCCCCCNNNCCGNNNNCCCCCGCCCCNNNGGNG
CGNCCCNCGATATATCATCGAAAACNCNTCCTAATTGGACATAATGTGGG
TTTAGGTCTCTTGCGTTCGTGGCNCGTCCCTTGTTTTCTAGATACGAAAC
AATGTGTTAGTGNTTGATACAACCTAATTTAGNTATATTGCCTCTCCCCG
GTCGTTGTAAATTTTCTTTAAAAGGTTGGATAGGGGAAAATTAACTCCAT
ATAACCGTGGCCTTTGTAAGAAAATAGTCCAACCCTTGGTAATATAAATA
AATTTGGCCTTCCCAATACAAGTTCCCCTTTGTGAAAATTTCTATATTCC
AAAGTGTGGGAAAAAAAATTGTGGCCACAAAAATTTTTCTAAAATAATAA
CCAAAATCCCTCCCCGTGTGGAATAGAATATTTTTTGCCCAATACTCTTT
TTCCTAACCAAAGGTGTTTTTTTTTTCAAGAAAAAGGTGGTGGGGGGCTT
TATATAAGTGAGAATATCTCTTATTTAAATATAATTTTCCTTAAAGGTGT
GTGGGAACATAGAGGTTATAAAGAAAATGTGGGCCTTAGATGGGGTGAAA
AAGGTACTAATGGTGGTTGTGGTATATATATATAGGGAAAAGATAAAAAA
ATTACTTTTCCCCCTTCTCATCATAGTTGTGGGGTGGTGGGGTGAGGTGG
GGAAATTTTGGTGGTTATAGGATGTCTTTGGGGTATAAATAACACACCCA
CCACCTCTTTTTGTGGGAAATAGTGGGTATCATATCATCTCTTGTGGGCG
ATGTAAATTTCTCTCCTCTCCCTCTATATATAAAATTAGTGTTGTGGAAT
ATAAACTATGTATTGTATATCTTTTCGTGGTGGGCGTAAAAGACAATATC
CCCCGCGGCCACATGTGTAATATATTATCTATCCTCCGGCGGGGGGGAGC
CTATATTTTATACACTCCCCCGTGAAGGAAAAGAAGGTGTGTTGTTTTTC
TTTCACAATTGTGTGTGGATGCTATTTATAATAAGTGTGGGAAGATATTA
TTTATGTGTGGTGCCCCGCCACATATACACTATAGTGTGTTTGTATATAT
TAATAATAATCACGGACTCCTCTCTTCTTTATTTATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_d14.b1 MSMg01no074_d14.b1 CHROMAT_FILE:
MSMg01no074_d14.b1 PHD_FILE: MSMg01no074_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:31 2005
         (142 letters)



>mm_chr3_9179475_9180016
          Length = 542

 Score =  259 bits (134), Expect = 4e-74
 Identities = 140/142 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttattgcagccacgtatttagagactgtcactcctggtaggcttccccattacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 342 agcttattgcagccacgtatttagagactgtcactcctggtagacttccccattacaaaa 283

                                                                       
Query: 61  cacaccaggactatttatttcaaaatgacaatgtgtttactcttctgagtggttaaatat 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 282 cacaccaggactatttatttcgaaatgacaatgtgtttactcttctgagtggttaaatat 223

                                 
Query: 121 ccccacatatttctctgtgtgg 142
           ||||||||||||||||||||||
Sbjct: 222 ccccacatatttctctgtgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)