Query= MSMg01no074_k13.b1 MSMg01no074_k13.b1 CHROMAT_FILE:
MSMg01no074_k13.b1 PHD_FILE: MSMg01no074_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:05 2005
(581 letters)
>mm_chr3_157985357_157986337
Length = 981
Score = 934 bits (483), Expect = 0.0
Identities = 486/487 (99%)
Strand = Plus / Minus
Query: 95 atgatctcatggccattcacacaacactaaatacaggaggaatatagcaatgacaagcat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 atgatctcatggccattcacacaacactaaatacaggaggaatatagcaatgacaagcat 922
Query: 155 gagaaggatcagcaacagcaagaagcaatacagagatgaagtccccagaactgtgcctct 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 gagaaggatcagcaacagcaagaagcaatacagagatgaagtccccagaactgtgcctct 862
Query: 215 ccaaggcacatccatcacagctgtgcaaaatggtggactgtatccaggaagctcactttc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccaaggcacatccatcacagctgtgcaaaatggtggactgtatccaggaagctcactttc 802
Query: 275 tcactgtatggcatccaccaaataatatcttttctaattcctgggctcagaggcatttcg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcactgtatggcatccaccaaataatatcttttctaattcctgggctcagaggcatttcg 742
Query: 335 tgtttgcttcagcttgacttttgagggcaatgctgacattcagcatatctccaacacatg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtttgcttcagcttgacttttgagggcaatgctgacattcagcatatctccaacacatg 682
Query: 395 cacctttaatacagactcagggcactctctccaagatctggatcccctcagattatcaag 454
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 cacctttaatacagactcagggcactctctccaagatctagatcccctcagattatcaag 622
Query: 455 tgaatttctgaaactagtttgaaatggcaactgatagaagcatagccatggctactccat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgaatttctgaaactagtttgaaatggcaactgatagaagcatagccatggctactccat 562
Query: 515 gtcagcatcctctgacacttgcaagtagattcctccaagacttcttcccttcaatgccct 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcagcatcctctgacacttgcaagtagattcctccaagacttcttcccttcaatgccct 502
Query: 575 ttttgga 581
|||||||
Sbjct: 501 ttttgga 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_k13.g1 MSMg01no074_k13.g1 CHROMAT_FILE:
MSMg01no074_k13.g1 PHD_FILE: MSMg01no074_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:05 2005
(540 letters)
>mm_chr3_157859536_157860472
Length = 937
Score = 905 bits (468), Expect = 0.0
Identities = 517/534 (96%), Gaps = 3/534 (0%)
Strand = Plus / Plus
Query: 7 cttgcatttgacccagtgaagaaagttcagtgcctaagcacataattgggaagtgaaatt 66
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 207 cttgcatttgacccagtgaagaaagttcagggcctaagcatataattgggaagtgaaatt 266
Query: 67 tgaaggaaataaaactgataaggaaaattgcttttattcaaacctcaaagaaccacatat 126
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgaaggaaataaaattgataaggaaaattgcttttattcaaacctcaaagaaccacatat 326
Query: 127 ctctctgttaggagaaatggatgtgactaaagaagcatactggatggtctagatattttg 186
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 327 ctctctgttaggagaaatggatgtgactacagaagcatactggatggtctggatattttg 386
Query: 187 tcagtgtttgaggtgtttactggtctccaaaatagaatgcgtaaatttaaatttttgaat 246
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 387 tcagtgtttgaggtgtttactggtctccaaaatagaatgcttaaatttaaatttttgaat 446
Query: 247 tgttcattctttagaggtaaaaatttccagacaaatggctgcttatccacttggtagagg 306
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 447 tgttcactctttagaggtaaaactttccagacaaattgctgcttatccacttggtagagg 506
Query: 307 acagatgggacaagaaaaggcagggataaattcaccatctatcctctatggtgctggctc 366
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 507 acagaggggacaagaaaaggcagggataaattcaccatctatcctgtatggtgctggctg 566
Query: 367 tgtcaagtatccttaatagtaataaacacagcttttttttttttaaactgactatttttt 426
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 567 tgtcaagtatccttaatagtaataaacacagctttttttttt--aaactgactctttttt 624
Query: 427 tttccttgagtatacttaactctgtcatgtgaaagggcttatatactccacaccaggaag 486
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tt-ccttgagtatacttaactctgtcatgtgaaagggcttatatactccacaccaggaag 683
Query: 487 aggtggccaaaacctgatggaatgcccttgcaagaaggatcccacatgactttg 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 684 aggtggccaaaacctgatggcatgcccttgcaagaaggatcccacatgactttg 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 937
Length adjustment: 10
Effective length of query: 530
Effective length of database: 927
Effective search space: 491310
Effective search space used: 491310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
