Query= MSMg01no074_p17.b1 MSMg01no074_p17.b1 CHROMAT_FILE:
MSMg01no074_p17.b1 PHD_FILE: MSMg01no074_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:32 2005
(583 letters)
>mm_chr3_85401403_85402380
Length = 978
Score = 659 bits (341), Expect = 0.0
Identities = 357/365 (97%), Gaps = 5/365 (1%)
Strand = Plus / Minus
Query: 5 ggaattcacttatctattacctaaacacagaagtcctgctccctgagttcaacaaacttc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggaattcacttagctattacctaaacacagaagtcctgctccctgagttcaacaaacttc 307
Query: 65 acctgatgtcagccactgtcaggcacatgtaaaataatcaccaaattcctcaatacatca 124
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 acctgatg-----cactgtcaggcacatgtaaaataatcaccaaattcctcaatacatca 252
Query: 125 tctccctcctgtatctgctgggaatccggattccaggcaaacccacctgtagtggctatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tctccctcctgtatctgctgggaatccggattccaggcaaacccacctgtagtggctatt 192
Query: 185 cctggttgtcaacttgactatatttggaatgaactacaatccagaattggaaggctcacc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cctggttgtcaacttgactatatttggaatgaactacaatccagaattggaaggctcacc 132
Query: 245 agtgacccttatctggaggcttggagatccttatctggatcttggtttggagatcttgag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 agtgacccttatctggaggcttggagatccttatctggatcttggtttggagatcttgag 72
Query: 305 tcatagtggctatggattccagaagattgaatctccgagtttaaggaacacgcctttaat 364
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 71 ccatagtggctatggattccagaagattgaatctccgagtttaaggaacacacctttaat 12
Query: 365 ctggg 369
|||||
Sbjct: 11 ctggg 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 978
Length adjustment: 10
Effective length of query: 573
Effective length of database: 968
Effective search space: 554664
Effective search space used: 554664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_p17.g1 MSMg01no074_p17.g1 CHROMAT_FILE:
MSMg01no074_p17.g1 PHD_FILE: MSMg01no074_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:32 2005
(607 letters)
>mm_chr3_85253467_85254472
Length = 1006
Score = 1120 bits (579), Expect = 0.0
Identities = 600/607 (98%), Gaps = 1/607 (0%)
Strand = Plus / Plus
Query: 1 agccccaagggaagaaaatgaagccctgctaagaacgcctcagtcctgagacagtcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccccaagggaagaaaatgaagccctgctaagaacgcctcagtcctgagacagtcagtt 260
Query: 61 ctaaaagacataaaacctgagagcttctgaagtggtccatgtcgggatggaaagagcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaaagacataaaacctgagagcttctgaagtggtccatgtcgggatggaaagagcatg 320
Query: 121 gggccaggcaggagaaacccctctgctgcgaccccactgctttctggacattaagtagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gggccaggcaggagaaacccctctgctgcgaccccactgctttctggacgttaagtagcc 380
Query: 181 ttgggctgagcacaggaaggaagaagcaggccctggaaacaccctggtggcttccatacc 240
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggctgagcataggaaggaggaagcaggccctggaaacaccctggtggcttccatacc 440
Query: 241 ctcgtcatagaggcagcagcattgagatggcacctctgtcatcaagattccctgatttgg 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcgtcatagaggcagcagcatcgagatggcacctctgtcatcaagattccctgatttgg 500
Query: 301 acagcttgtcagttcactttgctttcctgttcctggtgccctattctgtctgaggaggat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagcttgtcagttcactttgctttcctgttcctggtgccctattctgtctgaggaggat 560
Query: 361 tctaattcgccgttttaaatagtgttgccttaatgaaagcttacccagagtccagaggac 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 tctaattcgccgttttaaatagtgttgccttaatgaaagcttacccagggtccagaggac 620
Query: 421 ttaactgcacccctagagtcagaactaacgttgccttcagagctcaagcctgcgcggatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaactgcacccctagagtcagaactaacgttgccttcagagctcaagcctgcgcggatt 680
Query: 481 aattaattctgcctttaaagggggagaaagagaagccctggtcttttgagagccactata 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 aattaattctgcctttaaagggggagaaagaaaagccctggtcttttgagagccactata 740
Query: 541 aactacttctttattatttttttttgtcagttttatcaaccttctttaagagctggactc 600
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 741 aactacttctttattatttttttt-gtcagttttatcaaccttctttaagagctggactc 799
Query: 601 agcttta 607
|||||||
Sbjct: 800 agcttta 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
