BAC Information

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BAC

Clone NameMSMg01-075A01
Chromosome3 (Build37)
Map Location 47,966,155 - 47,966,468
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383850, LOC100039426, LOC666202
Downstream geneLOC666208, 1700018B24Rik, LOC100039404, EG666230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075A01.T7 (MSMg01no075_a01.b1)MSMg01-075A01.TJ (MSMg01no075_a01.g1)
ACCAG297923AG297924
length829678
length of high quality
(start - end)
---314 (85 - 398)
definitionCHROMAT_FILE: MSMg01no075_a01.b1 PHD_FILE: MSMg01no075_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:33 2005CHROMAT_FILE: MSMg01no075_a01.g1 PHD_FILE: MSMg01no075_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGGCCGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCAAGAAGAAGAAGCACGAAGCAAGAAGAAGAAG
AAGAAGAAGAAGAAGAACGACGACGATTAATATTATTTCCTACCCCTTTT
TCCCCCCCCCCTCCTTTTCTTTTCTTTTCCCCCTTTCCTTTTTCTCTCTT
TTTCCCTTCTCCCCCCCCTTCTCCTTTTTTCTCCTCTCTTTCCTCCCCCC
TTCTTTTTCCCTCTTTTTTCTCCCTCCCTTCCCCCTTCTTTCCCTCTTTT
CCGCCCCTTTTCCCTTTTTTCCCCCTCTCTTTTTTCCCCCCCTTTTTCTC
CCTCCCCCCCCCGTCCTTTTTTTTTTTCCTTTCTGTTTTCTTTCCCTTCC
CCCCCACCCCACCACTCGCCCTTTTCCTTCTTTCTTCTCTCTCCTTTTCC
CCTCTGCTTTCTCCTGCTTTTTTCTCTTTTCCCCTTTCTTTTCTCCCTCT
TTTTCTTCTTCCTTCCCCTCTTTTTCTTGTCCCCTTCTTGTTTTCCTCTC
CTCTTCTCCTTTGTTCCTCTCTTTTTCCTCCCTCTCCCCTCCTCCTCTTT
CTCCTGTCCCTTTATTTTCTTCCTTTTTTTCTTCCCTTCTTTTTCCCCTT
TTCCCCTCCCGCCTCTTCCCCCTCTTTCTTTCTCCCTCTCCTCCCTCTGG
GTCCTCCCTTTCCCTCCCTCTCTTCTTTTCTCCCTTTTCTCTCACCTTAC
TCTTCTCCTCTTCTCTTTCCCACCTCTCCCCTTTTCCCCTATTTTCCCCA
CCCCTCCCCCTCTCCACCTTCCCCTCTTN
TCTTNNCCTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAGCAACATATAGG
CAAAACACACATAAACATAAAGTCAAAAAGAATATGTATATTTGTCTGTC
CATATATACTTATACCTTTTGCTTTTAAATTGTGAGAGCAGTGTCGATAA
TAACAGCTAAAAAAGAAATGTAGTTATTTGCATTTATTTATATGTTTCTA
TATAAAATAGTCACAAAAAAAATCGTCCATAATATTAAGGTTGTCATGAA
ATCCTGTAGAATGGCACCTCTTAAATTAATTGATTTATATTTGAAGCAAT
ATTATATGGGTATCAATGAAAAAATTTAACTATACTTTGGTTACTTTCAA
TACTTTGCCATCTGTTTAGAAAATTAAGTTTTGAATATTTTAGGAAAAAA
CCTCACCAATTTTTAGTAATACTTTTTTCCATTAATGGTAGTTAAACATC
CATGATTGATTACTTCAACCAGGCAGTGGGCAAACAACATCCTAAATCCT
TGACGGTTTAAGTAAATGTGGAAGAAAAACTCAAGCAGACAACAGGCTGT
GACCGGATGTCCACTTGTCCAGGGAGCAAGAAGTTACAGATTTCTATGCT
GAGCATCTCTAATTGAATCACTGCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_a01.g1 MSMg01no075_a01.g1 CHROMAT_FILE:
MSMg01no075_a01.g1 PHD_FILE: MSMg01no075_a01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:33 2005
         (314 letters)



>mm_chr3_47965955_47966668
          Length = 714

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaagcaacatataggcaaaacacacataaacataaagtcaaaaagaatatgtatatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 taaagcaacatataggcaaaacacacataaacataaagtcaaaaagaatatgtatatttg 455

                                                                       
Query: 61  tctgtccatatatacttataccttttgcttttaaattgtgagagcagtgtcgataataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tctgtccatatatacttataccttttgcttttaaattgtgagagcagtgtcgataataac 395

                                                                       
Query: 121 agctaaaaaagaaatgtagttatttgcatttatttatatgtttctatataaaatagtcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agctaaaaaagaaatgtagttatttgcatttatttatatgtttctatataaaatagtcac 335

                                                                       
Query: 181 aaaaaaaatcgtccataatattaaggttgtcatgaaatcctgtagaatggcacctcttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaaaaaaatcgtccataatattaaggttgtcatgaaatcctgtagaatggcacctcttaa 275

                                                                       
Query: 241 attaattgatttatatttgaagcaatattatatgggtatcaatgaaaaaatttaactata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 attaattgatttatatttgaagcaatattatatgggtatcaatgaaaaaatttaactata 215

                         
Query: 301 ctttggttactttc 314
           ||||||||||||||
Sbjct: 214 ctttggttactttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)