Query= MSMg01no075_i04.b1 MSMg01no075_i04.b1 CHROMAT_FILE:
MSMg01no075_i04.b1 PHD_FILE: MSMg01no075_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:11 2005
(288 letters)
>mm_chr3_110060021_110060707
Length = 687
Score = 495 bits (256), Expect = e-144
Identities = 280/288 (97%), Gaps = 1/288 (0%)
Strand = Plus / Minus
Query: 1 gtccaatctctataataggtttttaaatatatttttagactgtagatccttatatcaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtccaatctctataataggtttttaaatatatttttagactgtagatccttatatcaggg 428
Query: 61 agaaataagaaatatgcatttgtgggggtaaaacacatcaggaaatccaagattaaaact 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 427 agaaataagaaatatgcatttgtggaggtaaaacacatcaggaaatccaagattaaaact 368
Query: 121 gtttaggagagagctggcatttaaatgccatattaatttgtaagcaagaaaacatatgag 180
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 367 gtgcaggagagagctggcatttaagtgccatattaatttgtaagcaagaaaacatatgag 308
Query: 181 tatcctcaataaaatgcaaaccatgccagcagaggtaaggtttctctctttttcttgttc 240
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 307 tatcctcaataaaatacaaaccatgccagcagagttaaggtttctctctttttcttgttt 248
Query: 241 attgggatgttctcctgattttagaatgacatttaatacctaatagac 288
||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 247 attgggatgtt-tcctgattttagaatgacatttaatacctaatagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no075_i04.g1 MSMg01no075_i04.g1 CHROMAT_FILE:
MSMg01no075_i04.g1 PHD_FILE: MSMg01no075_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:11 2005
(374 letters)
>mm_chr3_109903771_109904542
Length = 772
Score = 688 bits (356), Expect = 0.0
Identities = 369/374 (98%), Gaps = 2/374 (0%)
Strand = Plus / Plus
Query: 1 cctaatgtggcacatccatgcatttaacaatgcaattttccaggcactcacttgacttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaatgtggcacatccatgcatttaacaatgcaattttccaggcactcacttgacttcc 260
Query: 61 tgaagcctcttgtgagtgcatctgcagttcattcttgccagcccatgcacttaacaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagcctcttgtgagtgcatctgcagttcattcttgccagcccatgcacttaacaatga 320
Query: 121 tgttaatatttgtgctttactaggcaatccttgaattccttagctggtgatcgataagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttaatatttgtgctttactaggcaatccttgaattccttagctggtgatcgataagtc 380
Query: 181 tgacttatttataagggttaatgtaatgaatctcttctaagcatctcagattcagagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacttatttataagggttaatgtaatgaatctcttctaagcatctcagattcagagaga 440
Query: 241 gtggaatttcttcatctctatggaaatagatagcaattttatttttttactaattccagg 300
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 441 gtggaatttcttcatctctatggaaatagatagcaatttt--ttttgtactaattccagg 498
Query: 301 gactaataaagcacacatagttttctaagcttcttttagtaaatgagctgctatttgtag 360
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 499 gactaataaagcacacatagttttttaagcttcttttagtaaatgagctgctatctgtag 558
Query: 361 ttaaataaaggagg 374
||||||||||||||
Sbjct: 559 ttaaataaaggagg 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 772
Length adjustment: 9
Effective length of query: 365
Effective length of database: 763
Effective search space: 278495
Effective search space used: 278495
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
