Query= MSMg01no076_a14.b1 MSMg01no076_a14.b1 CHROMAT_FILE:
MSMg01no076_a14.b1 PHD_FILE: MSMg01no076_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:52 2005
(577 letters)
>mm_chr3_51617195_51618171
Length = 977
Score = 835 bits (432), Expect = 0.0
Identities = 457/472 (96%), Gaps = 11/472 (2%)
Strand = Plus / Minus
Query: 5 gaattccaggccaatgacagactctgtatctggaaagaacaaaaacaaaacagaaaacaa 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gaattccaggccaatgagagactctgtatctggaaagaacaaaaacaaaacagaaaacaa 402
Query: 65 aacaaacaacccacgagcagaagacaagcagaacctaaggaataaataacactcaaggcc 124
|||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 401 aacaaa-----------cagaagacgagcagaacctaaggaataaataacactcaaggcc 353
Query: 125 aggtggcctgcttcctctacagtcacctgtgcgcaagtgcacccacacagagaataaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aggtggcctgcttcctctacagtcacctgtgcgcaagtgcacccacacagagaataaatg 293
Query: 185 tactcgattatacacaggcacacatgcatgtgcacatacatacacacaaacacacacata 244
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 292 tactcgattatacacaggcacacatgcatgtgcacatacataaacacaaacacacacata 233
Query: 245 tacacaggtgcacatgcacatacacaaaaatatatacatatgcctgcacacagacagaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tacacaggtgcacatgcacatacacaaaaatatatacatatgcctgcacacagacagaca 173
Query: 305 cacagacacatgcatacacccacatacatccccacccagacacaccaagagcagtgcata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 cacagacacatgcatacacccacatacatccccacccagacacaccaagagcagtgcata 113
Query: 365 ctgatagccttactgtcacaactgaatggtgttgataatgattctgaaacctggaggaga 424
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ctgatagccttattgtcacaactgaatggtgttgataatgattctgaaacctggaggaga 53
Query: 425 agacccaggtcttaagggcatgaattgctcaccagcactctgtatgtgtcca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52 agacccaggtcttaagggcatgaattgctcaccagcactctgtatgtgtcca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_a14.g1 MSMg01no076_a14.g1 CHROMAT_FILE:
MSMg01no076_a14.g1 PHD_FILE: MSMg01no076_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:52 2005
(412 letters)
>mm_chr3_51457720_51458531
Length = 812
Score = 754 bits (390), Expect = 0.0
Identities = 405/410 (98%), Gaps = 2/410 (0%)
Strand = Plus / Plus
Query: 4 ggtggtgcccttctttaattccagcactcgggaggcagaggcagacagctctgtgagttc 63
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggtggtgcccttctttaatcccagcactcgggaggcagaggcagacagctctgtgagttc 263
Query: 64 caggccaatcttatctacagagcaaattcctggacaaccagggctacgtggaaaaaacct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caggccaatcttatctacagagcaaattcctggacaaccagggctacgtggaaaaaacct 323
Query: 124 gtccaaaaccaatctaccaaacaaaaacagatttaaaaaaatgtgatgaacagcaagtac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtccaaaaccaatctaccaaacaaaaacagatttaaaaaaatgtgatgaacagcaagtac 383
Query: 184 caacagggaaatctcaccacagacagaattagcagttaaggttgtcatttattgtgggtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 caacagggaaatctcaccacagacagaattagcagttaaggttgtcatttattgtgggtt 443
Query: 244 gggaaaacacacacatgcagcgcacatagagaaagagaccctctgtgaaggagaaagggg 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 gggaaaacacacacatgcagcgcacatagagaaagagaccctctgtgaaggagagagggg 503
Query: 304 gggaac-ctggaagctcagaaactctagtctctcctagaggcctgcgggtttggaggcct 362
|||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 ggga-ctctggaagctcagaaactctagtctctcctagaggcctgggggtttggaggcct 562
Query: 363 tggaagagagagtcttcctctcttactttagggccagtgagttgaagatg 412
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggaagagagagtcttcctctcttactttagggccagtgagttgaagatg 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
