Query= MSMg01no076_d12.b1 MSMg01no076_d12.b1 CHROMAT_FILE:
MSMg01no076_d12.b1 PHD_FILE: MSMg01no076_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:07 2005
(295 letters)
>mm_chr3_67887097_67887792
Length = 696
Score = 495 bits (256), Expect = e-144
Identities = 286/296 (96%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 1 ctacacagtaaaatgctgtctcaa-ataaa-aaaacaaagaaagtacttcacatatattg 58
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||| || |
Sbjct: 495 ctacacagtaaaatgctgtctcaaga-aaacaaaacaaagaaagtacttcacatacatcg 437
Query: 59 aggttcaatgtatgtgaagtaactactccatataacagtcacagcaacgtcagagataag 118
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aggtgcaatgtatgtgaagtaactactccatataacagtcacagcaacgtcagagataag 377
Query: 119 tgagcctgtggccattcatgacattccaaatgcattatacatcaggaggagcctacagac 178
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 376 tgagcctgtggccatgcatgacattccaaatgcattatacatcaggaggggcctacagac 317
Query: 179 atgtggaaccactgctagaaccattgtgctttatgaaatgacccatccagacagcttaaa 238
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 316 atgtggaaccactgttagaaccattgtgctatatgaaatgacccatccagacagcttaaa 257
Query: 239 caaagtctcactatgtactactacacattttcatactgtgtggtatgaaaatgatg 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 caaagtctcactatgtactactacacattttcatactgtgtggtatgaaaatgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 696
Length adjustment: 9
Effective length of query: 286
Effective length of database: 687
Effective search space: 196482
Effective search space used: 196482
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no076_d12.g1 MSMg01no076_d12.g1 CHROMAT_FILE:
MSMg01no076_d12.g1 PHD_FILE: MSMg01no076_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:07 2005
(279 letters)
>mm_chr3_67775127_67775805
Length = 679
Score = 511 bits (264), Expect = e-149
Identities = 276/280 (98%), Gaps = 2/280 (0%)
Strand = Plus / Plus
Query: 1 ttaacttggggtcctcgaagtgtgtaattcaagaataggtgaattttcatatgaggggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaacttggggtcctcgaagtgtgtaattcaagaataggtgaattttcatatgaggggaa 260
Query: 61 agcatgtcacactgtcatgactgcatatcctcaaggggtgctcatacccatcaggaggtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcatgtcacactgtcatgactgcatatcctcaaggggtgctcatacccatcaggaggtc 320
Query: 121 aaaaactgaggatggtgttagacacactgccaccattctacagtgtggacttgggcttgc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaactgaggatggtgttagacacactgccaccattctacagtgtggacttgggcttgt 380
Query: 181 ttagtcaggaatggtgagatgtgcaagttact-attggtcctggctatccaaaaggagag 239
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 381 ttagtcaggaatggtgagatgtgcaagttactcag-ggtcctggctatccaaaaggagag 439
Query: 240 gtttgtactcacagatcttatcttaggattttactgttgt 279
||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtttgtactcacagatcttatcttaggattttactgttgt 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
