Query= MSMg01no076_m12.b1 MSMg01no076_m12.b1 CHROMAT_FILE:
MSMg01no076_m12.b1 PHD_FILE: MSMg01no076_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:53 2005
(270 letters)
>mm_chr3_110245270_110245939
Length = 670
Score = 468 bits (242), Expect = e-136
Identities = 263/270 (97%), Gaps = 2/270 (0%)
Strand = Plus / Plus
Query: 2 ataaggagagagccttggtgtgcaaactatgttaaaaactttcatagcaatcaacacaag 61
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 202 ataaggagagagccttggtgtgcaaactatgttaaaaactttcatagcaaacaaaacaag 261
Query: 62 t-tttcaaataagcaaatagtttgaacagaaaccaaaccaaattataaacagagaaaacc 120
| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgttt-aaataagcaaatggtttgaacagaaaccaaaccaaattataaacagagaaaacc 320
Query: 121 cggcctgatcagggtcacaagtctcttcctttccaccccagcacaggggtaccttgggcg 180
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tggcctgatcagggtcacaagtctcttcttttccaccccagcacaggggtaccttgggcg 380
Query: 181 cgaagtctgcggacacctgcaaggtacccacaggaccctccatgggattttttttaattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgaagtctgcggacacctgcaaggtacccacaggaccctccatgggattttttttaattg 440
Query: 241 ggtattttcctcatttacattgccaatgct 270
||||||||||||||||||||||||||||||
Sbjct: 441 ggtattttcctcatttacattgccaatgct 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space: 172521
Effective search space used: 172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no076_m12.g1 MSMg01no076_m12.g1 CHROMAT_FILE:
MSMg01no076_m12.g1 PHD_FILE: MSMg01no076_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:53 2005
(269 letters)
>mm_chr3_110381213_110381881
Length = 669
Score = 489 bits (253), Expect = e-143
Identities = 265/269 (98%)
Strand = Plus / Minus
Query: 1 agtctaaattaggacacctcccaaagacaaacagcatggggtatgttcaatatcagctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agtctaaattaggacacctcccaaagacaaacagcatggggtatgttcaatatcagctta 410
Query: 61 ttcaggacacaccaaaggcatgctctaaaatatatcctatgactaagccttgagtagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttcaggacacaccaaaggcatgctctaaaatatatcctatgactaagccttgagtagaga 350
Query: 121 ctttaaaactgtcctgtatttacagatctctttctttaatattttgtagaagccgaaaac 180
||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 349 ctttaaaactgtcctctatttacagatctctttatttaatattttgtagaagctgaaaac 290
Query: 181 tgtggagcagagagaatcgtctttcttttaattcaaaacaatgatgccatgacaaccagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tgtggagcagagagaatcgtctttcttttaattcaaaacaatgatgccatgacaaccagt 230
Query: 241 tgaaatgtgaaagattgtcagatcaacaa 269
||||||||||| |||||||||||||||||
Sbjct: 229 tgaaatgtgaaggattgtcagatcaacaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
