BAC Information

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BAC

Clone NameMSMg01-076M17
Chromosome3 (Build37)
Map Location 158,018,821 - 158,019,066
singlet/doubletsinglet
Overlap geneLrrc7
Upstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40
Downstream geneLOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076M17.T7 (MSMg01no076_m17.b1)MSMg01-076M17.TJ (MSMg01no076_m17.g1)
ACCAG299286AG299287
length793755
length of high quality
(start - end)
162 (115 - 276)246 (133 - 378)
definitionCHROMAT_FILE: MSMg01no076_m17.b1 PHD_FILE: MSMg01no076_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:54 2005CHROMAT_FILE: MSMg01no076_m17.g1 PHD_FILE: MSMg01no076_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTTAACATTATTATATAATAACATTTTGTATCTTTCTGCGGCCCCG
CTTCCCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCATAAATTCCTTGTTTTTTATTAGATATTTT
CTTTATTTACATTTCAAATGTTATCCCTTTTCCTAGTTTCCCCTATGAAA
ATCCCCTCCCCCTCCCCCCCCCCCTGCTCACCAACTCACCCACTCCTGCT
TCCTGGCCCTGGTATTCCCCTTTACAGGTACATATAACCTTCACAGGACC
AAGGGCCTCTCCTCCCATTGATGACCGACTATGCCATCCTCTGCTACATA
AGCAGTTAGAGCCATGACTCCCACCATGTGTTTTTTTGTTTGTTTGTATG
TTTGTTTTTTGTTTTTGATTGTCGTTTTAGTCCCAGTAATCTCTTATAAT
ACTGAATAATTCATATTGGAGCTTCCACCCATGTTTCTGCAAACTCCTTC
ATTTCCTTTGTATAATTTCTCTTCTATCTCTTCGTTGTTTAATCCTGTTT
TATTCTTTATATGTATGCACCAATACAATCACTTTTCATAACTTGACATT
TTACTAAATTAATTCTCTCAAAGAACACAAAAAGACAAACAACTTATAAA
ACTCTTTTTTACTATAATACATTACACCATTAACACATCAAATTCATTCC
CTAAACCATTTTCTCACAACCCTCCCTCCTCTCTCAAATCATTTATTCAA
TTTAATTCAAATCCAATAATATATTAATATTAATAAATTAAAA
NCCCCCCNNNNNCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNCCNCCCAT
GATAACANTTCAATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAAATTCAAGCAATAAC
ATAGGAAGGAAGCATAGACCTCACAGAGTGGTGGTGAAGGAAGCTTCTAC
ATGTGCCATCTACAGAGTGAGGGTGAAAGAAACTTCTGCATTGGGCTACA
GAAGCAAAAGAACCAGATAAAGCAGGAAGACAGTGTTCTCAGAGTACTGA
GGTTCAGTGGGGATTAAACCTGGGTGGTCACATACAGAGAAGAGAGGCAG
AAATCTGAATCAGTTAAAGGTACACAGAATAACTCAGGCAAGGGATACAC
CAATGCACCAGTTCAAAGACTGGATAGATGTCTCAGTGATTAGGAGGCCT
TGTCACCCAGTCATCAAGGCTGGAATTCTTATCCCATAGCTTATTTAATC
AGAATCTGTCTCATGCCTATTTGTTACCCCACCCTTGAGTAGGGCAGAGA
CAATAAGATTGTTGGGGTTTGCTGTCTTCTAGCCACAAATCCCAGGAGAA
GCGCCACCTCAAAGGTCCTAAGAGCATTAGAGGACGGCACCAGATGCTCT
CTTCCCGCTTTTGTGTATATTCCCAGGTATATACACCTTCACACCACACC
TGTTTGCATGAACTCTATAAATGTATCACTTAACAAAACAATCCTCTTGA
TCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_m17.g1 MSMg01no076_m17.g1 CHROMAT_FILE:
MSMg01no076_m17.g1 PHD_FILE: MSMg01no076_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:54 2005
         (246 letters)



>mm_chr3_158018621_158019266
          Length = 646

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaaattcaagcaataacataggaaggaagcatagacctcacagagtggtggtgaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 taaaattcaagcaataacataggaaggaagcatagacctcacagagtggtggtgaaggaa 387

                                                                       
Query: 61  gcttctacatgtgccatctacagagtgagggtgaaagaaacttctgcattgggctacaga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcttctaaatgtgccatctacagagtgagggtgaaagaaacttctgcattgggctacaga 327

                                                                       
Query: 121 agcaaaagaaccagataaagcaggaagacagtgttctcagagtactgaggttcagtgggg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 326 agcaaaagaaccagataaagcaggaagacagtgttctcagagtactgaggctcagtgggg 267

                                                                       
Query: 181 attaaacctgggtggtcacatacagagaagagaggcagaaatctgaatcagttaaaggta 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 266 attaaacctgggtggtcacatccagagaagagaggcagaaatctgaatcagttaaaggta 207

                 
Query: 241 cacaga 246
           ||||||
Sbjct: 206 cacaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)