BAC Information

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BAC

Clone NameMSMg01-078C04
Chromosome3 (Build37)
Map Location 117,244,697 - 117,245,030
singlet/doubletsinglet
Overlap genenone
Upstream geneDbt, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078C04.T7 (MSMg01no078_c04.b1)MSMg01-078C04.TJ (MSMg01no078_c04.g1)
ACCAG299543AG299544
length705700
length of high quality
(start - end)
447 (50 - 496)462 (75 - 536)
definitionCHROMAT_FILE: MSMg01no078_c04.b1 PHD_FILE: MSMg01no078_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:22 2005CHROMAT_FILE: MSMg01no078_c04.g1 PHD_FILE: MSMg01no078_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGAAGTTACACTAGACTCCAAGGAGCCAAATAACCCTAGT
AAAAATGGGCTACAGAGCTAAACAAAGAATTCTCAACTGAGGAATATTGA
ATGACCCAGAAGCCACTAAAGAAATGTTCAACATCCTTAGTTACCAGAGA
AATGCAAATCAAAACAACCCTGAGGTTCCATCTCACAATGGTCAGAATGG
TTATGATCCAAAAACTCAGGTGACAGCTGATGCTGGTGAGGATGTGGAGA
AAGGGGAACACTCCTCCATTGCTGGTGGGATTGTAAGCTGGTACAACCAC
TCTGGAAATCTGTCTGGGGGCTCCTCAGAAAGTTGGAAACCATTCTACCT
GAGGATCCAGCTATACTACTTTTGGGCATATACCCAAAAGATGCTCCAAC
AAGGACTCATGCTCCACTGTGCTCATAGAAGCCATATTTATAATAGCCAG
AAGCTGGAAAGAACTCAGATGTTCCTCAACAGAGGAATGGATACTGAAAA
TGCATACCTATATAATGGATAATGTAAATGTTCCGGCACCACACACCATG
CCCGCCTGAAAATTCCTAATCGAATGGATGGACCTTCGAATTATCCCCCC
GAATGACTCAACCTAGTCTCAAAAGAAACTTATGTTTATGACTCTCTGAC
ACCCG
CCATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGTCTAAGGACTTTTTCTGCAGCAA
AGCTAGATTTTAAGATTGGTTAATCTAGTTGCCTTGCCCAGGTCACTGAA
TAAATTAGGAATCAGTTATTATATTGAAAATTACTTATAACACAGAGGTC
AGCATATTTTTAAATAATGTATAATTTAATTTTCTACTTAATTTTGTGAA
TTTTTAATTTATTCTTTGAGACTTTTATACATGTATATAATAAAATGTGA
TAATATTCACCCTAATTTTTCACTCCAACTACTCCCATATCTTCCCTAAC
ATGTTGGTCACCAATTTCATCATTTTCTTTTAAAACAACACACTAAGTCC
AAGCTCTTGACCTGAAAATTTTCCTTACCATGTGTTTAATAATGAAATTA
TCTGACTAAGATGTTTTCTCTAAGGAATGTTATATGATTATTCCATAATC
TTTAAACAACTTTTCCATTTTAGAAATTTTGATACTTACAGAAAATACAA
CAGCTGCAGCTGTATCAAAAAATAAATAAAAGCCATCAATCGCTAGTAGC
TCTGAGGATATTTTTCTTACCATTGAGTACTTTCAAAGTTAATCCCAGGC
ACTGCTTTTTTTCATACCTTTAAAAGATAAGCATCCTTTTTTTCCTGATA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_c04.g1 MSMg01no078_c04.g1 CHROMAT_FILE:
MSMg01no078_c04.g1 PHD_FILE: MSMg01no078_c04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:22 2005
         (462 letters)



>mm_chr3_117244169_117245030
          Length = 862

 Score =  600 bits (310), Expect = e-176
 Identities = 328/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 128 gcatatttttaaataatgtataatttaattttctacttaattttgtgaatttttaattta 187
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 862 gcatatttttaaataatgtataatttaattttctactttattttgtgaatttttaattta 803

                                                                       
Query: 188 ttctttgagacttttatacatgtatataataaaatgtgataatattcaccctaatttttc 247
           ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 802 ttctttgagacttttatacatgtatataataaaatatgataatattcacccgaatttttc 743

                                                                       
Query: 248 actccaactactcccatatcttccctaacatgttggtcaccaatttcatcattttctttt 307
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 742 actccaactactcccatatcttccctaacatgttggtcacaaatttcatcattttctttt 683

                                                                       
Query: 308 aaaacaacacactaagtccaagctcttgacctgaaaattttccttaccatgtgtttaata 367
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 682 aaaacaacacactaagtccaagctcttgacctgaaaattttccttaccgtgtgtttaata 623

                                                                       
Query: 368 atgaaattatctgactaagatgttttctctaaggaatgttatatgattattccataatct 427
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 622 atgaaattatctgactaagatgttttctctaaggaatgctatatgattattccataatct 563

                                             
Query: 428 ttaaacaacttttccattttagaaattttgatac 461
           ||||||||||||||||||||||||||||||||||
Sbjct: 562 ttaaacaacttttccattttagaaattttgatac 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)