Query= MSMg01no078_d19.b1 MSMg01no078_d19.b1 CHROMAT_FILE:
MSMg01no078_d19.b1 PHD_FILE: MSMg01no078_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:30 2005
(436 letters)
>mm_chr3_10169591_10170425
Length = 835
Score = 766 bits (396), Expect = 0.0
Identities = 423/432 (97%), Gaps = 1/432 (0%)
Strand = Plus / Plus
Query: 5 gaattcacattgtaccttatcatgcagcccacttgattgaacagtgtctagcatgtgaca 64
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacgttgtagtttatcatgcagcccacttgattgaacagtgtctagcatgtgaca 264
Query: 65 attaccatgtggaagttatgtggttttttttcattgtatccaatgggagcaagagtgggg 124
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 265 attaccgtgtggaagttatgtggttttttt-cattgtatccaatgggagcaagagtgggg 323
Query: 125 tgggaggggctacatggcatcctatgggtttgaactgttctctgcactttctgaagtaag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgggaggggctacatggcatcctatgggtttgaactgttctctgcactttctgaagtaag 383
Query: 185 ttctgcaaacaacaatggctctaataatttacagtttgatgaggttgtcttttctgcttt 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 384 ttctgcaaacaacaatggctctaataatttacagtttgatgaggttgtcttctctgcttt 443
Query: 245 ctccagagagccagccccttttcagacatacttacatttctggctcatggctgttaattc 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 ctccagagagccagccccttttcagacagacttacatttctggctcatggctgttaattc 503
Query: 305 tcacctttccttcattaatgcccagagccttgctgatcactgaaaacaaagtgcttcagt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcacctttccttcattaatgcccagagccttgctgatcactgaaaacaaagtgcttcagt 563
Query: 365 ttatgtcctctctgtccgtgatatgacctgactaaaactcattcatcttatctatgcatt 424
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttatgtcttctctgtccgtgagatgacctgactaaaactcattcatcttatctatgcatt 623
Query: 425 aattactgaaaa 436
||||||||||||
Sbjct: 624 aattactgaaaa 635
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 835
Length adjustment: 9
Effective length of query: 427
Effective length of database: 826
Effective search space: 352702
Effective search space used: 352702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_d19.g1 MSMg01no078_d19.g1 CHROMAT_FILE:
MSMg01no078_d19.g1 PHD_FILE: MSMg01no078_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:30 2005
(534 letters)
>mm_chr3_10277331_10278264
Length = 934
Score = 959 bits (496), Expect = 0.0
Identities = 523/532 (98%)
Strand = Plus / Minus
Query: 1 agtgtgtaaggcaggggctaaatgggaggagggagaaagagacatacaaatagtcctttc 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agtgtgtaaggcaggagctaaatgggaggagggagaaagagacatacaaatagtcctttc 673
Query: 61 gtttaactatggagtgtgacatctatatttgtctatggagtgcatgtgttacacacacac 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gtttaactatggagtgtgatatctatatttgtctatggagtgcatgtgttacacacacac 613
Query: 121 tttggtaacatgctctgtcacacttgtgatgctaaagaaaacctgatccacatgacagga 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 612 tttggtaacatgctctgtcacacttgtgatgttaaagaaaacctgatccacatgacagga 553
Query: 181 cccttagcaagtgaaaagttacttctaattctacattattgctaatattcaattttagtt 240
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 552 cccttagcaagtgaaacgttacttctaatgctacattattgctaatattcaattttagtt 493
Query: 241 ttcttctgccttgctaagaaacctgtaagtccctgattaccctctttttattcttcctca 300
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 492 ttcttctgccttgataagaaacctggaagtccctgattaccctctttttattcttcctca 433
Query: 301 ttgtatgcagaaaacaaacacaaaggaacaagtgagtttctccaatgagcactcatacat 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 432 ttgtatgcagaaaacaaacacaaaggaacaagtgagtttctccaacgagcactcatacat 373
Query: 361 ctgtttgaacaagcaatcccccagagggaaaatgctgtactctgtggtcttgcttcaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctgtttgaacaagcaatcccccagagggaaaatgctgtactctgtggtcttgcttcaaag 313
Query: 421 gaagccttggtgttctgtgactcaaggagggcaagtggaggcaggcagctgtccaatcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaagccttggtgttctgtgactcaaggagggcaagtggaggcaggcagctgtccaatcca 253
Query: 481 gaggagttcagtcaacatcgaggaggtggggacatccatcacagagagcagg 532
|||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 252 gaggagttcagtcaacatggaggaggtggggacatccatcacagagagcagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
