BAC Information

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BAC

Clone NameMSMg01-078I20
Chromosome3 (Build37)
Map Location 28,191,677 - 28,281,110
singlet/doubletdoublet
Overlap geneTnik
Upstream geneTnfsf10, Ghsr, Fndc3b, E030011K20Rik, Pld1
Downstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078I20.T7 (MSMg01no078_i20.b1)MSMg01-078I20.TJ (MSMg01no078_i20.g1)
ACCAG299860AG299861
length696697
length of high quality
(start - end)		244 (72 - 315)507 (72 - 578)
definitionCHROMAT_FILE: MSMg01no078_i20.b1 PHD_FILE: MSMg01no078_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:54 2005CHROMAT_FILE: MSMg01no078_i20.g1 PHD_FILE: MSMg01no078_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,191,677 - 28,191,920)(28,280,676 - 28,281,110)
sequence
NAAATCATAATTTGCGGCGCTAAACGACTCACTTTCGGAGCGGATCCGCG
GAATTCTCCATTACCAAGAAGAGGACTGGCTTTCCAGGATCCATCAGAAA
CAGGAAGATGGCCCTGGGAGCCATCAGGGTGTAGATAGTAACTGGCCAAT
TAGCTAGTCTCAAATCTGTGACTTCCTTTGTGCCTGTCATCAGAACACAC
CGTAGGCGCCCAGAGCATTCCTGCAGGAAGTCATCTGGAACCTACTAAAG
TGCTCCTTAGAAGTATATGAAAGGGATAGGTGCAGGCCTTCAAATGAAGG
TCAAAGATGGGGCTATNGTGGATTGGAAATGCAGAGTTTTCAGATACAAG
CACGGCTTAGAATTACGATATCGGATCCACAGGAGCACAGGCTCACCCTC
ACCTCCTGGCTGTGGCTGAGGGAGACAGACCTGCCTGAGACTGGTGTGTT
CTGGGACAAGAGAAGCCCACCTTGTTCTTGGCCATGGCGTGTGAGTGCAC
CGAGCTGCTGAGTCAGACCATCACAGTGATCGTCCCAGTCTCAGGGGCTG
AGCGAAGAGACCCTTTCCCCTGCCTCTGAGGACATGTGTGCATTTCTTTC
ATTTGTACCTTCTAGACTTTGGTAGGCTTCAGCAAGAGCATACACTCTTC
TTAGAGAGCTCTGTGGAAGCTCTCTGGCTATAGGAAGAGATGATAC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGATACCCACACAGTTCAATAGCTCATG
GCTGAGAAGTCAGCAGGCTATACCAGACTCAAGAAAAGTGAGTTCTTAGC
CAAATAACTCCTCTGTTTCAACTCCATTAGGATGACACTTAGCCAGTCAT
ACCTACAAGGATACTAAGCCAAGTGGCTGACTCATTAGCATTCTCTTTTC
AAGAGAATATAAGCAAAGATGCTTTTAAAAAGGATAATTTTTAATAATGT
GTACCAGTGTGTAGGTATGTACATGTGTGTGTAGGGGGTCTAAAGAGATC
AGAAGAAGGTGTCAGGGCCCCAGGAACTGGAGTTACAGGTAGTTGTAAAC
TGCCCAATGTGGGTACTGGGATCTGATCCTCCTGACAGCTGCCCAATCTC
TCCAGCCCCACAAAGATCCTTTTAAAAGAAAACAGAACACCATAAGATAT
CTAATCCATGGGCGGAGCAGAGGCAGCAATCTGGAAGAGTTTACAGTGTA
GCACTTAGGTTTGAAGAGTGTGGGGGTGGTTATAATATATTCCCTTACTC
TCGTCCTCCATTATATCCTTTTTCCTTTTTTTTTTCCCCCTTTCCCTCTT
TTTATTTTTCCTCTTTATCCCTCCTTTACTCCTTTCATTTCTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_i20.b1 MSMg01no078_i20.b1 CHROMAT_FILE:
MSMg01no078_i20.b1 PHD_FILE: MSMg01no078_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:54 2005
         (244 letters)



>mm_chr3_28191477_28192120
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggactggctttccaggatccatcagaaacaggaagatggccctgggagccatcagggtg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaccggctttccaggatccatcagaaacaggaagatggccctgggagccatcagggtg 260

                                                                       
Query: 61  tagatagtaactggccaattagctagtctcaaatctgtgacttcctttgtgcctgtcatc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tagatagtaactggccaattagctagtctcaaacctgtgacttcctttgtgcctgtcatc 320

                                                                       
Query: 121 agaacacaccgtaggcgcccagagcattcctgcaggaagtcatctggaacctactaaagt 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacacaccataggcgcccagagcattcctgcaggaagtcatctggaacctactaaagt 380

                                                                       
Query: 181 gctccttagaagtatatgaaagggataggtgcaggccttcaaatgaaggtcaaagatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctccttagaagtatatgaaagggataggtgcaggccttcaaatgaaggtcaaagatggg 440

               
Query: 241 gcta 244
           ||||
Sbjct: 441 gcta 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no078_i20.g1 MSMg01no078_i20.g1 CHROMAT_FILE:
MSMg01no078_i20.g1 PHD_FILE: MSMg01no078_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:54 2005
         (507 letters)



>mm_chr3_28280676_28281582
          Length = 907

 Score =  787 bits (407), Expect = 0.0
 Identities = 428/435 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatacccacacagttcaatagctcatggctgagaagtcagcaggctataccagactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atgatacccacacagttcaatagctcatggctgagaagtcagcaggctataccagactca 376

                                                                       
Query: 61  agaaaagtgagttcttagccaaataactcctctgtttcaactccattaggatgacactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agaaaagtgagttcttagccaaataactcctctgtttcaactccattaggatgacactta 316

                                                                       
Query: 121 gccagtcatacctacaaggatactaagccaagtggctgactcattagcattctcttttca 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 315 gccagtcatacctacaaggataccaagccaagtggctgactcattagcattctcttttca 256

                                                                       
Query: 181 agagaatataagcaaagatgcttttaaaaaggataatttttaataatgtgtaccagtgtg 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 255 agagaacataagcaaagatgcttttaaaaaggataatttttaataatgtgtaccagtatg 196

                                                                       
Query: 241 taggtatgtacatgtgtgtgtagggggtctaaagagatcagaagaaggtgtcagggcccc 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 195 taggtatgtacatgtgtgtgtaggggatctaaagagatcagaagaaggtgtcagggcccc 136

                                                                       
Query: 301 aggaactggagttacaggtagttgtaaactgcccaatgtgggtactgggatctgatcctc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 135 aggaactggagttacaggtagttgtaaactgcccaatgtgggtactgggacctgatcctc 76

                                                                       
Query: 361 ctgacagctgcccaatctctccagccccacaaagatccttttaaaagaaaacagaacacc 420
           |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 75  ctgacagctgcccaatttctccaggcccacaaagatccttttaaaagaaaacagaacacc 16

                          
Query: 421 ataagatatctaatc 435
           |||||||||||||||
Sbjct: 15  ataagatatctaatc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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