BAC Information

Click to search

BAC

Clone NameMSMg01-078N18
Chromosome3 (Build37)
Map Location 5,159,453 - 5,159,854
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667709, LOC620283
Downstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165, LOC100041193
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078N18.T7 (MSMg01no078_n18.b1)MSMg01-078N18.TJ (MSMg01no078_n18.g1)
ACCAG300091AG300092
length694698
length of high quality
(start - end)
402 (184 - 585)---
definitionCHROMAT_FILE: MSMg01no078_n18.b1 PHD_FILE: MSMg01no078_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:19 2005CHROMAT_FILE: MSMg01no078_n18.g1 PHD_FILE: MSMg01no078_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGTCCTCACACTAATCATGGACTCACATAGGCTGAAGCATAAATGT
TCTACTGACATAAGCTTATGAACGCCACTGAAATAAAAACATATATTGCG
TGTGCGTGTGAGAGTATGTCTGTGAGTATGTAATATGAACGAAATACAAC
AAAAATGAAACAAATATAATGGTTAATGTTTAATTTTATTTTAAACACTT
TATTTTAAATTGCATATTTACTTCACATTAAAAATGAATTGCTAATATTT
TTCGAGTGAACATTGATTTAAAATACCATAGATAATATCAGAATTCATTA
TCCTGTTACACTGCAAAATGTTGTCTACTTATGACACTCAAACTGAAATA
TAATGTCATTTTTTTCTTTAAGTAATTTCTGCCTTACCTGGAGAAATAAA
GGTATAAAATTTTGGTTTTTAAACAATGTAAAAGAAAAGGAAATTATATA
CATGAATAAATACCCTATCATCTGTTTTTCACTGAAATCAGCAAATACAT
TACAAAGTAAGAGAGACACATGAGGTATTTCCTAAGCACAATATACTTGT
AGAGGAAGAATATGGTCCCACAGATTCATGCCTGAATGAAGCATACAACC
TTAAATATTCAAAACATGGTTGACCTAACTTTCTACAGGATACA
ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAATACTAGACTCCGTGGAGAGGATTGAC
TGATGATTCTGTGAAGCACATATGTAGACCAAGAATTTTGCCCTTGATAA
AAGGCTGAGAAATCCCTGTGTGTTGGTGTTAACATCCCTAATCTGCATCC
TCTAGCCCATCGCCAACCCTCTGAAAATCCACCTCATACCCACTTACATC
GGTAAGAGGATAAGATGATGCCGATACCTGACGCTGATCACTGCTTTTCA
AAAAGAGAAAACTCCTCCTTTGATGTTGANAATTGTCAGCTGTCCTCCCA
GTGCTGAATTTCCATCTGCCGCACCCGCTGAAATCTGACTCTTGTGCTAC
TTGAAGACCCTGCTATTCCATTCTTGGACATATACTCTCATGATGCTCAC
CATATTCTAAGAATGCCTGATACTCTATGCTCATAATAACCATATCCATT
GAGTTCATGCTTATACGATTTTTATTTACTGATATATACTTGAAGAGATC
TGTATTCTAAAAAACATTCATAGACTTTTATACCGACATAAAAACAAATT
AATGGTATTTGAGCTGGTAATATGAATTTTATTTTTAATGGTAATATAAG
AAACATTCAACTCTTTTGAGAGGCCATATGCATTTCTGACCCTTTAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_n18.b1 MSMg01no078_n18.b1 CHROMAT_FILE:
MSMg01no078_n18.b1 PHD_FILE: MSMg01no078_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:19 2005
         (402 letters)



>mm_chr3_5159253_5160054
          Length = 802

 Score =  754 bits (390), Expect = 0.0
 Identities = 399/402 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgaacgaaatacaacaaaaatgaaacaaatataatggttaatgtttaattttatttta 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 602 tatgaacgaaatacaacaaaaatgaaacaaacataatggttaatgtttaattttatttta 543

                                                                       
Query: 61  aacactttattttaaattgcatatttacttcacattaaaaatgaattgctaatatttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aacactttattttaaattgcatatttacttcacattaaaaatgaattgctaatatttttc 483

                                                                       
Query: 121 gagtgaacattgatttaaaataccatagataatatcagaattcattatcctgttacactg 180
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gagtgaacattgagataaaataccatagataatatcagaattcattatcctgttacactg 423

                                                                       
Query: 181 caaaatgttgtctacttatgacactcaaactgaaatataatgtcatttttttctttaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caaaatgttgtctacttatgacactcaaactgaaatataatgtcatttttttctttaagt 363

                                                                       
Query: 241 aatttctgccttacctggagaaataaaggtataaaattttggtttttaaacaatgtaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aatttctgccttacctggagaaataaaggtataaaattttggtttttaaacaatgtaaaa 303

                                                                       
Query: 301 gaaaaggaaattatatacatgaataaataccctatcatctgtttttcactgaaatcagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gaaaaggaaattatatacatgaataaataccctatcatctgtttttcactgaaatcagca 243

                                                     
Query: 361 aatacattacaaagtaagagagacacatgaggtatttcctaa 402
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aatacattacaaagtaagagagacacatgaggtatttcctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)