BAC Information

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BAC

Clone NameMSMg01-078P08
Chromosome3 (Build37)
Map Location 3,268,222 - 3,268,700
singlet/doubletsinglet
Overlap geneLOC667655
Upstream genenone
Downstream geneLOC100039140, Hnf4g, EG383815, LOC100039157, LOC100039167, LOC667709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078P08.T7 (MSMg01no078_p08.b1)MSMg01-078P08.TJ (MSMg01no078_p08.g1)
ACCAG300166AG300167
length904679
length of high quality
(start - end)		---480 (75 - 554)
definitionCHROMAT_FILE: MSMg01no078_p08.b1 PHD_FILE: MSMg01no078_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:26 2005CHROMAT_FILE: MSMg01no078_p08.g1 PHD_FILE: MSMg01no078_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCCCTTCCTCTCCCCTCCGCCGCCACCCCGCACTCCCCCTCCCCCCTC
TCTTACAACTCTACTTCTCCCCCCCTCCCCTCTAGACTACCACTTAACCT
CCCTACACCCCCCCCTCCCTCATTCGCCCCCGCCTACCTCTTCCTCCCCT
CTTTCTTTTTTTTCGACTCTATCCCTTTCTATCCGCCCCCTCTCCCCCAT
GCTGTTCCACCCTTCGTCTCTCCCCAGCATGATTAGTTGTTTTACTGTTT
TACACTTCTCGCTCCCCTCTCTCTCCCCTCCGCTCCTCTCCACCTCCCTC
ATGCTCTACACCCCTCCTTTCCCCCTCCCCCTCCCTCCCACCTCACTCTT
GCTCAGCCATCCTCCCACCCTCCCCCCCCCTCTCGTCTGTACCTCCTCCT
TTGTCTACATCTCCCCTCAACATCACCTACCAAACCACCCCCCCCCTCTC
TCCCCCTTCTCCCCCCCCCGCCATCTCCCCATTTCCGTCTCCCCTCTCAT
CAACGACTCTATACCCTCTATCATTCGACCCCCCCCTTCTGCTTGCCTCC
CCCCCACCTACCTGCCGACACAGCCTTTCTCTAAGAAATAAAAAAAATAT
TTTTTTTTGGGGCCCGCGGTGGTCCCCCCCGGGGCCCCCCCCCTTTTATA
AAATTTTACACGGGGAAAAACCTTTTCCCAACCCCTTTTAATACCTTAGA
GCGGGGGACACGAGACGAAGATGGCAATTTCCGGGGGCCCGCGGGAAAAA
AATATGTTCCGTTATCAAAAAAAACAAGGGTTGTCTTAAACGGAAAATCT
TTTTTCAAAGGGACATAATAAAAGGGTTTTTGTGCAACAGAGGTTCTAAA
ATTAAATTTTGGGGGTGCCGTGCGAACGAAGTGGATTAAACGGGAAAAAA
AAAG

NACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTTATACTACCTTCATTCTTTTCT
TCTGACTGTATATACTCTATCTATTCTCATTTAGCATAAATATGTATATG
CACATTTAATTCAATTCTCTCTTTATTTCCACTCACATACATTTTATTGA
CTACCAAATTTGTAGCATATCTCTGTACAACAAATAACTTTAGGATTTTA
TAAACTTTTAATCACATTCATTAATTTAAAAGAAATACTTGATAAAAAAC
TATAAATCAAAATTTAATAATGAAATAGATTCAGTTTCTATACCAGTATC
TTACAGAAATGTAGAATTTATAGAAAATGAAACCAAAGAGCCTTCTATCT
TACTAAAGGTTCTTATTATGAAACTGTTATGTAGGGTTGGTTCTGAGACT
AGGGGTCCTGTTAACCAACTGGTTCTTGATCCATCAATAAACATGCTTAG
CAATGAACAGGCAGGACTTCCAGGTTCCCATAGACAAGCTAACATATGCA
AGAGAACAGGGGTGGCGCTGAGGTTCGTGTGCCACTTCATCTACTACCCT
TCTTCCTTCTTCTCTCCATCCTCTCTTTCTCACTTCCATTTTAAACACAA
CTCATACATCACATTATATAATAAAACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_p08.g1 MSMg01no078_p08.g1 CHROMAT_FILE:
MSMg01no078_p08.g1 PHD_FILE: MSMg01no078_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:26 2005
         (480 letters)



>mm_chr3_3268022_3268901
          Length = 880

 Score =  920 bits (476), Expect = 0.0
 Identities = 479/480 (99%), Gaps = 1/480 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttatactaccttcattcttttcttctgactgtatatactctatctattctcatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttatactaccttcattcttttcttctgactgtatatactctatctattctcatttag 260

                                                                       
Query: 61  cataaatatgtatatgcacatttaattcaattctctctttatttccactcacatacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataaatatgtatatgcacatttaattcaattctctctttatttccactcacatacattt 320

                                                                       
Query: 121 tattgactaccaaatttgtagcatatctctgtacaacaaataactttaggattttataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgactaccaaatttgtagcatatctctgtacaacaaataactttaggattttataaa 380

                                                                       
Query: 181 cttttaatcacattcattaatttaaaagaaatacttgataaaaaactataaatcaaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttaatcacattcattaatttaaaagaaatacttgataaaaaactataaatcaaaatt 440

                                                                       
Query: 241 taataatgaaatagattcagtttctataccagtatcttacagaaatgtagaatttataga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taataatgaaatagattcagtttctataccagtatcttacagaaatgtagaatttataga 500

                                                                       
Query: 301 aaatgaaaccaaagagccttctatcttactaaaggttcttattatgaaactgttatgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgaaaccaaagagccttctatcttactaaaggttcttattatgaaactgttatgtag 560

                                                                       
Query: 361 ggttggttctgagactaggggtcctgttaaccaactggttcttgatccatcaataaacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggttggttctgagactaggggtcctgttaaccaactggttcttgatccatcaataaacat 620

                                                                       
Query: 421 gcttagcaatgaacaggcaggacttccaggttcccatagacaagctaacatatgcaagag 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gct-agcaatgaacaggcaggacttccaggttcccatagacaagctaacatatgcaagag 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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