BAC Information

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BAC

Clone NameMSMg01-079D09
Chromosome3 (Build37)
Map Location 120,273,976 - 120,274,184
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079D09.T7 (MSMg01no079_d09.b1)MSMg01-079D09.TJ (MSMg01no079_d09.g1)
ACCAG300348AG300349
length721718
length of high quality
(start - end)
200 (226 - 425)72 (457 - 528)
definitionCHROMAT_FILE: MSMg01no079_d09.b1 PHD_FILE: MSMg01no079_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:46 2005CHROMAT_FILE: MSMg01no079_d09.g1 PHD_FILE: MSMg01no079_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CATTCATATCCCACAGACTTCTCTCTCTGGCCCTGTGCATCAGCAGAGCA
GAATGTCTGTGGAACAGGTGATCTCCATGTACACACCCCACTCTTAGCCC
TGTGCCAGGCTTATGCTTCCCTCTCTCTCTTCATGAAAACAGGCATGCTG
AAAATATGTTTGCAGATGGAACAGAAATGCTGTGCACATTATAGCCATCA
TGTCAAAGCAGGAGAACTTCAGCCATAACAAGTAAAAACAAAAAGCACTG
AAGAGTCCACCCACCCCCACCCCTGCCACACACACACACACACACACACT
TCCACCGAACATAGTTATTCCCATGCCAAGATACGGTGAGTCACCAACAT
ATTTTGTTCAGCTTCTTTCAAAGAGGACAGGGGTGGGAGTGACAGGCGAG
AACACAGGAATTCTTGGACTACGATCAGGTGTCGAATGCTGGAACAAAGG
TTTTTCTGTGCCTCTTGATTTTGAAACGGGAAGCTCTTGCTTCCTCGGTA
AAGGAGTAGAAGAGTGAGAAGAGGAAAACGCGGTGCGAAAGAAATGTCAC
CCACATTCCCACTTGGATGTCTGCTCCGTAACTGATTTTGTCTGGNTTTC
ATTTTAGCATTTTAAATGATTGTAATGAAGAGCCCCAAGAGAGAAGTGAA
GTCCACGAGTTAAAAATAATG
TGTGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATGTGGTGGAAGGAGAGAACTGGCTCCCATAAGTT
GTCCTTTGATCTCTGTTCATGCACAGTGGCATGCACAGACAGCCCATCCC
CACAAAAGATGTTTAAAAAGTCTTTAATAAAAGAAAAGAACAGATTTGGT
GACAGATGACAACTCCAAGGGGGAAATGATGTGCTATTTTTTTTTGTGAA
TGTAACTTTATGTCGCTTTTCAAACTGACAATGAAGAATGAACAATTTTA
ATAAGTTCTTCCTTCAATTCTCCGAATGCAGTTTTGAGATAGAGCTATAA
AGCACATAAGTGAGCTTAATCTGATAAGTAAGCCGAGCTATTTTCCATGT
ACTTAATTTGAATATTCTTGAACAGAGATAAAAATTATTATGTGTACACG
AAGTGGAATCATCTGACTTCACAATAAGTAACTTTTAAATTGCCAGTGGT
GTCATCTTACTCTCTACTAGGTACAAATACATACATATAAATGGTCTTCT
TGGTACCAATGAGCTAAGAGAAAGACTTGCGGCCATTTGAAAGATGCTAA
TTGTGAGAAATACTACAATGTCAGTATCTTTTCAATCAGCATCTATTAAG
TATACATTTCTTCTCCTAGATATTATGAGAACCCTACAATAACTATGAAT
TATGATTTGCACTAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_d09.b1 MSMg01no079_d09.b1 CHROMAT_FILE:
MSMg01no079_d09.b1 PHD_FILE: MSMg01no079_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:46 2005
         (200 letters)



>mm_chr3_120273776_120274376
          Length = 601

 Score =  346 bits (179), Expect = e-100
 Identities = 198/209 (94%), Gaps = 9/209 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgctgtgcacattatagccatcatgtcaaagcaggagaacttcagccataacaagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgctgtgcacattatagccatcatgtcaaagcaggagaacttcagccataacaagtaa 260

                                                                       
Query: 61  aaacaaaaagcactgaagagtccacccaccccc-acccctgccacacacacacacacaca 119
           ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 aaacaaaaagcactgaaaagtccacccaccccccacccctgccacacacacacacacaca 320

                                                                       
Query: 120 cacac--------ttccaccgaacatagttattcccatgccaagatacggtgagtcacca 171
           |||||        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacacacacacttccaccgaacatagttattcccatgccaagatacggtgagtcacca 380

                                        
Query: 172 acatattttgttcagcttctttcaaagag 200
           ||| |||||||||||||||||||||||||
Sbjct: 381 acacattttgttcagcttctttcaaagag 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 601
Length adjustment: 8
Effective length of query: 192
Effective length of database: 593
Effective search space:   113856
Effective search space used:   113856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)