CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTAGATAGAACGCCAGTCCTCACAGTCTTCTGAAATAAGTAAGT
CTGTCTCCATACAGTAAATCAGCAGATTGTCTACAACTATGCACACAGGG
TTTGGTGCATTTCAAGTATGCTTTATTGAGAACCAGACATGTCCCACACA
GAATATCAGAGAATGCTTAGATATGTCTTTCTAATCCTAAAATTGAAAAG
TCAATATGAACTACCACCTTTGGCTGAACCAGGATTAATATTGTGGGATT
GAGATGAGAGTGATTAACTATTATTATCACCTTTACTAAGAATACATTTG
TTAAAGGCCAAGTTCCAGTGTTGAAATATCCAAATGAGAACAGGTGTGAT
GTCACTCTGTGTGTTTATTTTATTATAATATGGACAGACTTCAGAAACTA
ATATTCTGACTAGAAAATCTTTCTTTAATTTTTAGCTCACAATTAAAATA
TATTTGTGGCAGTATTGAAAAGATAGCATACCGAATCTGGTTTAAAGTAT
TTTTCTTTATATCATTAATTTCATTTTCCCATAAGCAAAATGTAATTTGT
AATCAAGAAATCACAGAAAATATTTTCTTATGTTTTCCTAACTGAAGATT
AGTTTATTTTGTGATAAATTATTTTTATATTGTCCAATCTATATTATC

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCCTAAATCCATCTGGTCCTGGGCTTACTT
TGGTTCTGATACTATTAATGACTGCTTCAATTTCTTAAGGGGTTATGGGA
CTGTCCAGATGGTTTTTTATTTTTATCACCTTGTATGTGTCTAGAGAATT
GTCCATTTCATCCAGATTTTCCAATTTAGTTGAGAATAAAATTTCGTTGT
AGGATCTGATTATTTTATGTCTCCTTTTTCATTTCTGATTTTATGAATTT
GGATACTACCTCTGTGCCCTCTAGTTAGTTTGGCTAAGGGCTTATCTATC
TGTTGATGATCAGTTTTGGAGAAGGTACCATGAGGTGCTGAGAAGAAAGT
ATATTTATCTATCTTTTTGAAAGAACAAGATCCTGGTTTAATTGATTCTT
TGTGTTGTTCTTTTTGTTTATACTTGGTTGATTTCAATTCTGAGTTTGAT
TATTTCCTGCCATCTACTCATCTTGGGTATATTTGCTTCTTTTTGTTCTA
GAGCTTTCAGGTGTGTTGTCAAGATGTTAGTGTAAGCTCTCTCCAGTTTC
TTTTTGGAGGCACATAGAGCTATGAGTTTTCCTCTTACCACTGTTTTCAT
TGTGTCCCATAAATTTTGGTATGATGTGTCATCAT

Query= MSMg01no079_f01.b1 MSMg01no079_f01.b1 CHROMAT_FILE:
MSMg01no079_f01.b1 PHD_FILE: MSMg01no079_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:55 2005
         (652 letters)



>mm_chr3_44634723_44635772
          Length = 1050

 Score = 1183 bits (612), Expect = 0.0
 Identities = 639/648 (98%), Gaps = 2/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttagatagaacgccagtcctcacagtcttctgaaataagtaagtctgtctcca 63
           |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattca-agatagaa-gccagtcctcacagtcttctgaaataagtaagtctgtctcca 261

                                                                       
Query: 64  tacagtaaatcagcagattgtctacaactatgcacacagggtttggtgcatttcaagtat 123
           |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 262 tacagtaaatcagcagattgtctacaactatgtacacagggtttgatgcatttcaagtat 321

                                                                       
Query: 124 gctttattgagaaccagacatgtcccacacagaatatcagagaatgcttagatatgtctt 183
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 322 gctttattgagaaccaggcatgtctcacacagaatatcagagaatgcttagatatgtctt 381

                                                                       
Query: 184 tctaatcctaaaattgaaaagtcaatatgaactaccacctttggctgaaccaggattaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tctaatcctaaaattgaaaagtcaatatgaactaccacctttggctgaaccaggattaat 441

                                                                       
Query: 244 attgtgggattgagatgagagtgattaactattattatcacctttactaagaatacattt 303
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 attgtgggattgagatgagagtgattaactattattgtcacctttactaagaatacattt 501

                                                                       
Query: 304 gttaaaggccaagttccagtgttgaaatatccaaatgagaacaggtgtgatgtcactctg 363
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtttaaggccaagttccagtgttgaaatatccaaatgagaacaggtgtgatgtcactctg 561

                                                                       
Query: 364 tgtgtttattttattataatatggacagacttcagaaactaatattctgactagaaaatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tgtgtttattttattataatatggacagacttcagaaactaatattctgactagaaaatc 621

                                                                       
Query: 424 tttctttaatttttagctcacaattaaaatatatttgtggcagtattgaaaagatagcat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tttctttaatttttagctcacaattaaaatatatttgtggcagtattgaaaagatagcat 681

                                                                       
Query: 484 accgaatctggtttaaagtatttttctttatatcattaatttcattttcccataagcaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 accgaatctggtttaaagtatttttctttatatcattaatttcattttcccataagcaaa 741

                                                                       
Query: 544 atgtaatttgtaatcaagaaatcacagaaaatattttcttatgttttcctaactgaagat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 atgtaatttgtaatcaagaaatcacagaaaatattttcttatgttttcctaactgaagat 801

                                                           
Query: 604 tagtttattttgtgataaattatttttatattgtccaatctatattat 651
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tagtttattttgtgataaattatttttatattgtccaatctatattat 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1050
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1040
Effective search space:   667680
Effective search space used:   667680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)