Query= MSMg01no079_h08.b1 MSMg01no079_h08.b1 CHROMAT_FILE:
MSMg01no079_h08.b1 PHD_FILE: MSMg01no079_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:05 2005
(539 letters)
>mm_chr3_124932518_124933458
Length = 941
Score = 942 bits (487), Expect = 0.0
Identities = 526/539 (97%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 1 attgatgttgagaatgtattgatctttcttcattatataatttcaacatttctttc-aat 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 739 attgatgttgagaatgtattgatctttcttcattatataatttcaacatttctttcaaat 680
Query: 60 tatatacaagtctggtatagtaattacttttcattggctcatatttggagatatcattgt 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 679 tatatacaagtctggtatagtaattacttttcattggctcatatttggatatatcattgt 620
Query: 120 tgttgaagaagatatggtgactaaaggcagctaaaaactattccaggtgagcatgaaatg 179
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgttgaagaagatatagtaactaaaggcagctaaaaactattccaggtgagcatgaaatg 560
Query: 180 ggtgtttaaaatatggcaccaggaaaaagaaactggagatcaaaatagggctgagccaca 239
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 559 ggtgtttaaaatatggcaccaggataaagaaactggagatcaaaatagggctgagccaaa 500
Query: 240 accttcaggttagatcacttggtcacccaatattctagcatagttggaatttccaaaggt 299
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 499 accttcaggttagatcacttggtcacccaatattccagcatagttggaatttccaaaggt 440
Query: 300 tttatacagtctaccaaaacttgagcacaaatccatgagcctgctgagcaaaaataatag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 tttatacagtctaccaaaacttgagcacaaatccatgagcctgctgagcaaaaattatag 380
Query: 360 tgacaacagctaaaaaccaagacttactgaattatagtgatagaacaggattctcaagaa 419
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 379 tgacaacagctaaaaaccaagacttactgaattgtagtgctagaacaggattctcaagaa 320
Query: 420 tacatacaatggcaagttatctcttttaatta-ttttgactagtttagaacgagtacagt 478
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 319 tacatacaatggcaagttatctcttttagttaattttgactagtttagaacgagtacagt 260
Query: 479 gttttctgcttcttatttaatcaatttccctagtcatttgtccttagatgacaataaat 537
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gttttctgcttcttattttatcaatttccctagtcatttgtccttagatgacaataaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 941
Length adjustment: 10
Effective length of query: 529
Effective length of database: 931
Effective search space: 492499
Effective search space used: 492499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_h08.g1 MSMg01no079_h08.g1 CHROMAT_FILE:
MSMg01no079_h08.g1 PHD_FILE: MSMg01no079_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:06 2005
(527 letters)
>mm_chr3_124758544_124759470
Length = 927
Score = 975 bits (504), Expect = 0.0
Identities = 522/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Plus
Query: 1 agttgaagtgactcacattaatgtggagaagaataaatctcagattaggctaccttcaaa 60
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 201 agttgaagtgactcacattaatgtggagaagaataaatttcagattaggccaccttcaaa 260
Query: 61 gtttagagactgtgccaggccagcagcacagctgagtaagtaaccccaaagtttatggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gtttagagactgtgccaggccagcagcacagctgagtaagtaaccccaaagtttatgcta 320
Query: 121 aatcttagtttcattccaatgggatgagaatacaagagtaaacagttcaagacccagagc 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcttagtctcattccaatgggatgagaatacaagagtaaacagttcaagacccagagc 380
Query: 181 cctctttccaaatatctggagatttttatggagtgg-tcgggaggtaagagattgaagta 239
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 381 cctctttccaaatatctggagatttttatggagtggat-gggaggtaagagattgaagta 439
Query: 240 gtcttttctttcctttttgggcaaaaggactcttagttgagtagttggtgcttgcacact 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcttttctttcctttttgggcaaaaggactcttagttgagtagttggtgcttgcacact 499
Query: 300 ttgagacaaaatcatccttccccagtccatcaactcagacatcagtgtcttcaggaaata 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttgagacaaaatcatccttccccagtccatcaactcagacatcagtgtcttcaggaaata 559
Query: 360 cccctgcagacacacttaggcatagttacacaacagatgtctagatattccttaatctag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccctgcagacacacttaggcatagttacacaacagatgtctagatattccttaatctag 619
Query: 420 caaaggggacatttcaaaattaagtacttcagtgcttacattctatgtcagaaaatgaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 caaaggggacatttcaaaattaagtacttcagtgcttacattctatgtcagaaaatgaca 679
Query: 480 gtgtccattattaatcacatgaaaaattaagacaaggtgaaatggatg 527
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgtccattattaatcacatgaaaaattaagacaaggtgaaatggatg 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
