BAC Information

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BAC

Clone NameMSMg01-079J03
Chromosome3 (Build37)
Map Location 71,875,992 - 71,876,639
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079J03.T7 (MSMg01no079_j03.b1)MSMg01-079J03.TJ (MSMg01no079_j03.g1)
ACCAG300619AG300620
length696695
length of high quality
(start - end)
650 (47 - 696)621 (75 - 695)
definitionCHROMAT_FILE: MSMg01no079_j03.b1 PHD_FILE: MSMg01no079_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:14 2005CHROMAT_FILE: MSMg01no079_j03.g1 PHD_FILE: MSMg01no079_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTAACTCAAACGATCAGAGAGTAAGAACTGTTAGCATGCTTGT
TACATACTTTGCTTCTTGATTTTGAGAAGAATGGATTCCAACCCTTGATT
AATTAGGTATTTTGAATGACTCAGGTAAGCTGCTGAGAGTTTGCTTACTC
ATTTTTTAATCACTTAATTGTTTTATTTATTTACATTCCAAATGCTGCTT
CTTTTAAAAATCTCCCCTCCTGTCTGTCTCTTCTCATACCTCATCCTGCC
CACTCTTCTCAGCTGCCTCTCCTCCCTCCCTCTACGCCCCCCCACCACAT
GTTTGTGTCCTATTAAAGGAAAAGTTATTGCTTCATATAATAGATGCCAT
GCTAAAATAATATTCACATAAATTACTTAGAACAGTCTCTGGCAAAAGAA
CATGGCTTATAATTTTGTGTTAAGGATATGAGTATGGTTGAGTAAAAGTA
GTTCCTATGGGGAAAAAAGATGAATAGTACAAAATAAATCAATAATTAAC
CAACACCATTAAAAGCATATTCATACATTAGGATTAATGAATAATTGTAT
TATTGTATAGAGTTGCATTTATTTTTTATGTATGCATGTAATTCTCACAC
CCTTCTTAGAATGACAAAGCAAAGGGTCACTGAGAGTTAACAGTTN
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCACA
GAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGAAACTCACACAATATATATTCACTGATAAGT
GGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_j03.b1 MSMg01no079_j03.b1 CHROMAT_FILE:
MSMg01no079_j03.b1 PHD_FILE: MSMg01no079_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:14 2005
         (650 letters)



>mm_chr3_71875789_71876840
          Length = 1052

 Score = 1205 bits (623), Expect = 0.0
 Identities = 642/649 (98%), Gaps = 4/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttaactcaaacg-atcagagagtaagaactgttagcatgcttgttacatact 62
           |||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||
Sbjct: 851 ggaattctttaactcaaa-gtatcagagagtaagaattgttagcatgcttgttacatact 793

                                                                       
Query: 63  ttgcttcttgattttgagaagaatggattccaacccttgattaattaggtattttgaatg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttgcttcttgattttgagaagaatggattccaacccttgattaattaggtattttgaatg 733

                                                                       
Query: 123 actcaggtaagctgctgagagtttgcttactcattttttaatcacttaattgttttattt 182
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 732 actcaggtaagctgctgagagtttgcttactcatttcttaatcacttaattgttttattt 673

                                                                       
Query: 183 atttacattccaaatgctgcttcttttaaaaatctcccctcctgtctgtctcttctcata 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atttacattccaaatgctgcttcttttaaaaatctcccctcctgtctgtctcttctcata 613

                                                                       
Query: 243 cctcatcctgcccactcttctcagctgcctctcctccctccctctacg--cccccccacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 612 cctcatcctgcccactcttctcagctgcctctcctccctccctctacgcccccccccacc 553

                                                                       
Query: 301 acatgtttgtgtcctattaaaggaaaagttattgcttcatataatagatgccatgctaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acatgtttgtgtcctattaaaggaaaagttattgcttcatataatagatgccatgctaaa 493

                                                                       
Query: 361 ataatattcacataaattacttagaacagtctctggcaaaagaacatggcttataatttt 420
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 492 ataatattcacataaattacttagaacagtctttggcaaaagaacatggcttataatttt 433

                                                                       
Query: 421 gtgttaaggatatgagtatggttgagtaaaagtagttcctatggggaaaaaagatgaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtgttaaggatatgagtatggttgagtaaaagtagttcctatggggaaaaaagatgaata 373

                                                                       
Query: 481 gtacaaaataaatcaataattaaccaacaccattaaaagcatattcatacattaggatta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtacaaaataaatcaataattaaccaacaccattaaaagcatattcatacattaggatta 313

                                                                       
Query: 541 atgaataattgtattattgtatagagttgcatttattttttatgtatgcatgtaattctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgaataattgtattattgtatagagttgcatttattttttatgtatgcatgtaattctc 253

                                                            
Query: 601 acacccttcttagaatgacaaagcaaagggtcactgagagttaacagtt 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 acacccttcttagaatgacaaagcaaagggtcactgagagttaacagtt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1052
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1042
Effective search space:   666880
Effective search space used:   666880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)