Query= MSMg01no080_a18.b1 MSMg01no080_a18.b1 CHROMAT_FILE:
MSMg01no080_a18.b1 PHD_FILE: MSMg01no080_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:50 2005
(248 letters)
>mm_chr3_29690222_29690870
Length = 649
Score = 416 bits (215), Expect = e-121
Identities = 233/239 (97%), Gaps = 1/239 (0%)
Strand = Plus / Plus
Query: 8 attccaaatga-taccaaggcatgctccccctacctcctcacaaatgtattcatgttgtt 66
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 attccaaatgtgtaacaaggcatgctccccctacctcctcacaaatgtattcatgttgtt 267
Query: 67 gttggtaaatgcgtgtcaaaggaaggataaggggagaatcaacacacaaaattgtcccct 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gttggtaaatgcgtgtcaaaggaaggataaggggagaatcaacacacaaaattgtcccct 327
Query: 127 aaccttcacatgcatgacaaagcatgctgttcctaccaaccccataattgcattcatgtt 186
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 328 aacctccacatgcatgacaaagcatgctcctcctaccaaccccataattgcattcatgtt 387
Query: 187 ggtggtagtaaattctagagatgaattatctttagcataacaagtatgacatatctttc 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggtggtagtaaattctagagatgaattatctttagcataacaagtatgacatatctttc 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space: 152960
Effective search space used: 152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no080_a18.g1 MSMg01no080_a18.g1 CHROMAT_FILE:
MSMg01no080_a18.g1 PHD_FILE: MSMg01no080_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:50 2005
(490 letters)
>mm_chr3_29850069_29850958
Length = 890
Score = 940 bits (486), Expect = 0.0
Identities = 489/490 (99%)
Strand = Plus / Minus
Query: 1 caaggaccaaggtgacatgacctgtgtatgggagtgcccaatagtgtttggcttttctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 caaggaccaaggtgacatgacctgtgtatgggagtgcccaatagtgtttggcttttctta 631
Query: 61 acattccttcctttttgttgttgttgttttgttttcctttttaatgaactaaataccaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 acattccttcctttttgttgttgttgttttgttttcctttttaatgaactaaataccaat 571
Query: 121 agatgcaacttagtttttgtaatactgaaatcgattcaattgtataaatgattataattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 agatgcaacttagtttttgtaatactgaaatcgattcaattgtataaatgattataattt 511
Query: 181 ctttcatggaagcatgatccttctgattaagaactgtaccccatattttatgctggttgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ctttcatggaagcatgatccttctgattaagaactgtaccccatattttatgctggttgt 451
Query: 241 ctgcaagcttgtgcgatgatgttatgttcatgttaatcctatttgtaaaatgaagtgttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgcaagcttgtgcgatgatgttatgttcatgttaatcctatttgtaaaatgaagtgttc 391
Query: 301 ctgaccttatgttaaaaagagagaagtaaataacagacattactcagttattttgtcctt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 390 ctgaccttatgttaaaaagagagaagtaaataacagacattattcagttattttgtcctt 331
Query: 361 tatcgaaaaaccagatttcatttttcctttttgtttgtgatctcatttggaaataattgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tatcgaaaaaccagatttcatttttcctttttgtttgtgatctcatttggaaataattgg 271
Query: 421 caagttgaggtactttcttcccatgctttgtacaatataaactgttatgcctttcagtgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 caagttgaggtactttcttcccatgctttgtacaatataaactgttatgcctttcagtgc 211
Query: 481 gttactgtgg 490
||||||||||
Sbjct: 210 gttactgtgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
