BAC Information

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BAC

Clone NameMSMg01-080C09
Chromosome3 (Build37)
Map Location 113,283,241 - 113,471,655
singlet/doubletdoublet
Overlap geneRnpc3
Upstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686, LOC100043688, LOC100043207, Amy1
Downstream geneCol11a1, LOC100043220
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080C09.T7 (MSMg01no080_c09.b1)MSMg01-080C09.TJ (MSMg01no080_c09.g1)
ACCAG301060AG301061
length695695
length of high quality
(start - end)		577 (40 - 616)413 (71 - 483)
definitionCHROMAT_FILE: MSMg01no080_c09.b1 PHD_FILE: MSMg01no080_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:58 2005CHROMAT_FILE: MSMg01no080_c09.g1 PHD_FILE: MSMg01no080_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,283,241 - 113,283,811)(113,471,243 - 113,471,655)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGAGGATCCGCGGAATT
CATATATCCCTCATGGAGGGGGTTACTACAATGGAGTTGAAATTAGGGGA
AATAGCTTTACATATTATGATTCATGTGTCTAATTTCCTTTATATTAATG
GACAGTAGAATTAAAAAGAAAACCCAATTTTCAGTCACTTTCTCAAAATA
ATAATGTGTGTTGCACTCTTTAGAAATTTAAAAACAGTTACTTCATAAAT
GCACAGAAAGTTAAACACACAATCTACCATGGAAGGTGACTCTAATGGAA
TTGAAATTAGGGGCAAATAGTTCTATATACTCTTTTATAATTCATATATA
CTTTTGAATATATTATATCCTTTCTCATCACCTATTTATATCTCCTTTCT
AAATTTTTTAGACATTACCTATGTGTATGCCCATTTACATATATGGATAT
ATACATTATGAGCTAGGAATAGACTTGAGAAAGAATATGTTGGGTTTTGT
TTCTTTTTGAGTTTGGATCAAAGCACTTAACATTACACATTTTCCTGAAA
GTTTCATTATTTCACTTTTATTTATAGTTGAAAAATACTCCATGATGTAT
ATTGCACTATGTTTTTATTATCCATTCAGCTATTGATGAACATCTAGGCT
CACTTCATCTTCTTGCTAATGTGCCGGAGCACGAATAAACATAGT

ATAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGACGGCTGAGATTTGAATAAGCGACTATC
ATATCCAGATGACGGGCAATTGTTCCTGTCAGTTGCCTGAGGAGCTGCTA
ATCATGACTCCCACAGTGGGCTTGTGATTCCCATCAGCCTGCTACCCACA
TGCTGCCCAAGGCCAACAAATGAGATGTCTGCCCTGGATTAGGTTTCCAA
TCACAGTTTTAATAGACATAACGAGCTAAAATTCATGTGTCTAAGTAATA
TATTGGGTCTAGTCTCATATAAACATTATTCTACTACTAAAATGGAAATT
TACCTGTCTGAGATAAATACCAATAAATGGCCAATAAATACATTTTATGA
GAAATTTTAGTTCATTAATATATAACCTCGGGAAATAATTTGCTCATTTA
AAAATGAAACTTGGGGCTGGAGAGATGGCTCAGCGGTTATGAGCACTGAC
TGCTCTTCCAGAAGTCCTGAGTTCAATTCCCAGCAGCCACATGGTGGCTC
ACAACCATCTGTAACGCGATCTGATGCCTTCCTCTGGTATGTCTGAAGAC
AGCTACAGCGTACTCACATACATCCAATATTTGATTACTTTATAATAAAT
CCAAATGAAACTTTTAAACATGTAAGCGATTGCCTTCCAATACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_c09.b1 MSMg01no080_c09.b1 CHROMAT_FILE:
MSMg01no080_c09.b1 PHD_FILE: MSMg01no080_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:58 2005
         (577 letters)



>mm_chr3_113283035_113284011
          Length = 977

 Score = 1081 bits (559), Expect = 0.0
 Identities = 568/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcatatatccctcatggagggggttactacaatggagttgaaattaggggaaatag 66
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcatatatccatcatggagggggttactacaatggagttgaaattaggggaaatag 266

                                                                       
Query: 67  ctttacatattatgattcatgtgtctaatttcctttatattaatggacagtagaattaaa 126
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 267 ctttacatattatgattcatgtgtctaattttctttatattaatggacagtagaattaaa 326

                                                                       
Query: 127 aagaaaacccaattttcagtcactttctcaaaataataatgtgtgttgcactctttagaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aagaaaacccaattttcagtcactttctcaaaataataatgtgtgttgcactctttagaa 386

                                                                       
Query: 187 atttaaaaacagttacttcataaatgcacagaaagttaaacacacaatctaccatggaag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttaaaaacagttacttcataaatgcacagaaagttaaacacacaatctaccatggaag 446

                                                                       
Query: 247 gtgactctaatggaattgaaattaggggcaaatagttctatatactcttttataattcat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtgactctaatggaattgaaattaggggcaaatagttctatatactcttttataattcat 506

                                                                       
Query: 307 atatacttttgaatatattatatcctttctcatcacctatttatatctcctttctaaatt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atatacttttgaatatattatatcctttctcatcacctatttatatctcctttctaaatt 566

                                                                       
Query: 367 ttttagacattacctatgtgtatgcccatttacatatatggatatatacattatgagcta 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttagacattacctatgtgtatgcccatttacatatatggatatatacattatgagcta 626

                                                                       
Query: 427 ggaatagacttgagaaagaatatgttgggttttgtttctttttgagtttggatcaaagca 486
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ggaatagacttgagaaaaaatatgttgggttttgtttctttttgagtttggatcaaagca 686

                                                                       
Query: 487 cttaacattacacattttcctgaaagtttcattatttcacttttatttatagttgaaaaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cttaacattacacattttcctgaaagtttcattatttcacttttatttatagttgaaaaa 746

                                          
Query: 547 tactccatgatgtatattgcactatgttttt 577
           |||||||||||||||||||||||||||||||
Sbjct: 747 tactccatgatgtatattgcactatgttttt 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no080_c09.g1 MSMg01no080_c09.g1 CHROMAT_FILE:
MSMg01no080_c09.g1 PHD_FILE: MSMg01no080_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:58 2005
         (413 letters)



>mm_chr3_113471043_113471855
          Length = 813

 Score =  791 bits (409), Expect = 0.0
 Identities = 412/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacggctgagatttgaataagcgactatcatatccagatgacgggcaattgttcctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 agacggctgagatttgaataagcgactatcatatccagatgacgggcaattgttcctgtc 554

                                                                       
Query: 61  agttgcctgaggagctgctaatcatgactcccacagtgggcttgtgattcccatcagcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 agttgcctgaggagctgctaatcatgactcccacagtgggcttgtgattcccatcagcct 494

                                                                       
Query: 121 gctacccacatgctgcccaaggccaacaaatgagatgtctgccctggattaggtttccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gctacccacatgctgcccaaggccaacaaatgagatgtctgccctggattaggtttccaa 434

                                                                       
Query: 181 tcacagttttaatagacataacgagctaaaattcatgtgtctaagtaatatattgggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacagttttaatagacataacgagctaaaattcatgtgtctaagtaatatattgggtct 374

                                                                       
Query: 241 agtctcatataaacattattctactactaaaatggaaatttacctgtctgagataaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtctcatataaacattattctactactaaaatggaaatttacctgtctgagataaatac 314

                                                                       
Query: 301 caataaatggccaataaatacattttatgagaaattttagttcattaatatataacctcg 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 313 caataaatggccaataaatacattttataagaaattttagttcattaatatataacctcg 254

                                                                
Query: 361 ggaaataatttgctcatttaaaaatgaaacttggggctggagagatggctcag 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggaaataatttgctcatttaaaaatgaaacttggggctggagagatggctcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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