Query= MSMg01no080_i12.b1 MSMg01no080_i12.b1 CHROMAT_FILE:
MSMg01no080_i12.b1 PHD_FILE: MSMg01no080_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:28 2005
(271 letters)
>mm_chr3_100628954_100629624
Length = 671
Score = 424 bits (219), Expect = e-123
Identities = 262/291 (90%), Gaps = 23/291 (7%)
Strand = Plus / Plus
Query: 4 ggaattcctcagaccccgagcttagatcctccttgtggccttgtgcaattgaaagatagc 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaattcctcagacagtgagtttagatcctccttgtggccttgtgcaattgaaagatagc 240
Query: 64 gacctgtataaattcaagccccgaggtagagactgggaaacttctcctcaccctttcac- 122
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gacctgtatgaattcaagccccgaggtagagactgggaaacttctcctcaccctttcaca 300
Query: 123 ----------------------cctgggccttggcttcacggagctatttcctcatacct 160
||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggtcagggcctagaaaggcatccctgggccttggcttcacggagctatttcctcatacct 360
Query: 161 gagccgtccacagctacatgcacccctcccagcctgcactatttaaagacagcacaaagg 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagccgtccacagctacatgcacccctcccagcctgcactatttaaagacagcacaaagg 420
Query: 221 aacccgatgtgagtcacaacacccaggagggcagcagcaggtaggcagctc 271
||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 421 aacccgatgtgagtcacaacacccaggagggcagcagcaggcaggcagctc 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no080_i12.g1 MSMg01no080_i12.g1 CHROMAT_FILE:
MSMg01no080_i12.g1 PHD_FILE: MSMg01no080_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:28 2005
(461 letters)
>mm_chr3_100805152_100806012
Length = 861
Score = 750 bits (388), Expect = 0.0
Identities = 443/464 (95%), Gaps = 6/464 (1%)
Strand = Plus / Minus
Query: 1 atgggccctatggagtcagcagtttttatagtagaataggtaacaaccatagaaaggaca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 661 atgggccctatggagtcagcagtttttatagtagaataggtaacaaccataggaaggaca 602
Query: 61 gactccgtgactagcaagcatggcccctatgagacaggtgagatgctgcacggtctatct 120
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 601 gactccgtgactagcaagcatgtcccctatgagacaggtgagatgctgcacggtctatat 542
Query: 121 atgtgagaatgtgtggagcaggtgcaaaggaagaactctggagggagacagtaaaacaat 180
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 541 atgtgagaacgtgtggagcaggtgcaaaggaggaactctggagggagacagtaaaacaat 482
Query: 181 gatgtcacttatgtctcttctgaaaatgttcacaagcctgggccacgaccagcagggatt 240
|| ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 481 gacgtcacttgtgtctcctctgaaaatgctcacaagcctgggccacgaccagcagggatt 422
Query: 241 tcactgctactaacactatgtgttcccaaggcagtcctgtgactgagacactggcctgga 300
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 421 tcactgcaactaacaccatgtgttcccaaggcagccctgtgactgagacactggcctgga 362
Query: 301 ccacctcactgctcctggctggtggttagggaaacaggct---ccactgacaaaaagtcc 357
|||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 361 ccacctcactgctcctggctggtggttagggaaacaggctggagca---acaaaaagtcc 305
Query: 358 ttaaggattggagaccataagcctaaactcagcttacagtcctaccatgtattagctatg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttaaggattggagaccataagcctaaactcagcttacagtcctaccatgtattagctatg 245
Query: 418 tcatcagactgtgtttccacatatggcgttcggctttctcataa 461
|||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 244 tcatcagactgtgtttccacatatggggtttggctttctcataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space: 383801
Effective search space used: 383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
