BAC Information

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BAC

Clone NameMSMg01-080J05
Chromosome3 (Build37)
Map Location 144,596,904 - 144,789,328
singlet/doubletdoublet
Overlap geneClca6, Clca3, Clca5, Odf2l
Upstream geneLOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448
Downstream geneCol24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080J05.T7 (MSMg01no080_j05.b1)MSMg01-080J05.TJ (MSMg01no080_j05.g1)
ACCAG301379AG301380
length697741
length of high quality
(start - end)		515 (44 - 558)201 (75 - 275)
definitionCHROMAT_FILE: MSMg01no080_j05.b1 PHD_FILE: MSMg01no080_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005CHROMAT_FILE: MSMg01no080_j05.g1 PHD_FILE: MSMg01no080_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,788,818 - 144,789,328)(144,596,904 - 144,597,104)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTACCCCACCCCCCATATTTGGTATCATGAACGCATTCATGGGCATG
ACATTGAGATCTGAGTCCTTGGTCAAGGCCTTCTGAATATTATGCTCACT
TCCCATCTCATTAGCCATTCTAAGTCCAACACTCACGTTTTCTAGACTAA
TTCCTTCCACAGTGTTCTTAAATAATGGCAAAAGTAATTCAACTGAACAG
GATGCCAACTGAGCTTCCTTAAGCGTTGCTTTCAACTCCATCTTTGTATT
TGCGACGTCTTGCTTGAGCCTAATAACAGACAAATAAGCTTGAAGTTACT
TCTAACACATAAACTGTAGACTTTTTATATAAGACGAGAACGGTCAAGTC
TGCCTCTGGACTGACATGGGTTTGACTTAGATGCCCCTAGGGGAGACCTT
ACCACCAGGACTATAAGCATCCAGGTCAAACATAGACTGACAGAGGCCAA
AAGACGTGGACCTTGAGTACAGGTAGGAGAATAGTTCATCTCACATTTTG
CTGCTATGGAGTCACACGCAATGTACATTTAAATTTGTGCATAGGGCTAG
AGAGATGGCTCAGCACTGGTGGTCCTCAGAGGACCCAGGTTCTATTCCCA
GCCCAGAGGGTAGTTCACAGCTCTTTTTACCTCCAGCTCTGGGGAAA

ACTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGTATGGGCCTAGCCAGTGTTTAT
GTTCATGACCAGTATTAAATAAACTTGCTTTAATTGGACACTCATGGCCT
TGGTCTCTTTCTTCCAATTTTCAGATTTAACAATACAATTGAGGTTTTAG
TTTTTAGATTTTTAGTTGTTTAGTTATTTTTCTTTTATTATTATTTTATA
TTTTATTATTATTATTTTTATTTTTAGTTAATTTTTTCGTTTTCGGCCCC
CCTCCTCGGGGTTCCGTCCTTTTTTTTTTTCTTTTTCTGTGCCTCGCTGT
CTGAACACCAGACCTCTCCTTTCCCCCCTTCCCCCCCTTTTTCCATTCCC
CATATTCACCCGGATTTGGGGGCCCCCCACATTTCTACTTTTTTGTTTCC
CTTTTCTTCCCCCTTTCTTTCCTCCCCCCTTGCCGCCGCCCTCGCGCTTG
TTTTCCCTCCCATACCGATTTTGTTTTCCCTCTCGTTTCATTTTACAACC
TTCCCTCCTTTCCCTTCTCTACCCTCTTTCCCCCCTTTCATTCCTCCTTT
CTCTCCCACCCCCCCTGTTTTCTGGCTCTCCCATTTCCTTATTCGTTTTT
ACCCCCTTTTTCTTTCCCCCCCGTTTCTCTCCTCTTCATCTACCTCGCTT
CTTCTTATCTTACTCCCCTCTCTCAATCGTCCCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_j05.b1 MSMg01no080_j05.b1 CHROMAT_FILE:
MSMg01no080_j05.b1 PHD_FILE: MSMg01no080_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:31 2005
         (515 letters)



>mm_chr3_144788614_144789528
          Length = 915

 Score =  942 bits (487), Expect = 0.0
 Identities = 505/511 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaccccaccccccatatttggtatcatgaacgcattcatgggcatgacattga 64
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 715 gaattcttaccccagcccccatatttggtatcatgagcgcattcatgggcatgacattga 656

                                                                       
Query: 65  gatctgagtccttggtcaaggccttctgaatattatgctcacttcccatctcattagcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gatctgagtccttggtcaaggccttctgaatattatgctcacttcccatctcattagcca 596

                                                                       
Query: 125 ttctaagtccaacactcacgttttctagactaattccttccacagtgttcttaaataatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttctaagtccaacactcacgttttctagactaattccttccacagtgttcttaaataatg 536

                                                                       
Query: 185 gcaaaagtaattcaactgaacaggatgccaactgagcttccttaagcgttgctttcaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gcaaaagtaattcaactgaacaggatgccaactgagcttccttaagcgttgctttcaact 476

                                                                       
Query: 245 ccatctttgtatttgcgacgtcttgcttgagcctaataacagacaaataagcttgaagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccatctttgtatttgcgacgtcttgcttgagcctaataacagacaaataagcttgaagtt 416

                                                                       
Query: 305 acttctaacacataaactgtagactttttatataagacgagaacggtcaagtctgcctct 364
           ||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||
Sbjct: 415 acttctaacacataaactggagaccttttatataagacgagaacggtcaagcctgcctct 356

                                                                       
Query: 365 ggactgacatgggtttgacttagatgcccctaggggagaccttaccaccaggactataag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggactgacatgggtttgacttagatgcccctaggggagaccttaccaccaggactataag 296

                                                                       
Query: 425 catccaggtcaaacatagactgacagaggccaaaagacgtggaccttgagtacaggtagg 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 catccaggccaaacatagactgacagaggccaaaagacgtggaccttgagtacaggtagg 236

                                          
Query: 485 agaatagttcatctcacattttgctgctatg 515
           |||||||||||||||||||||||||||||||
Sbjct: 235 agaatagttcatctcacattttgctgctatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no080_j05.g1 MSMg01no080_j05.g1 CHROMAT_FILE:
MSMg01no080_j05.g1 PHD_FILE: MSMg01no080_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:31 2005
         (201 letters)



>mm_chr3_144596704_144597304
          Length = 601

 Score =  381 bits (197), Expect = e-110
 Identities = 200/201 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtatgggcctagccagtgtttatgttcatgaccagtattaaataaacttgctttaat 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtatgggcctggccagtgtttatgttcatgaccagtattaaataaacttgctttaat 260

                                                                       
Query: 61  tggacactcatggccttggtctctttcttccaattttcagatttaacaatacaattgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggacactcatggccttggtctctttcttccaattttcagatttaacaatacaattgagg 320

                                                                       
Query: 121 ttttagtttttagatttttagttgtttagttatttttcttttattattattttatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttagtttttagatttttagttgtttagttatttttcttttattattattttatatttt 380

                                
Query: 181 attattattatttttattttt 201
           |||||||||||||||||||||
Sbjct: 381 attattattatttttattttt 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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