Query= MSMg01no080_o12.b1 MSMg01no080_o12.b1 CHROMAT_FILE:
MSMg01no080_o12.b1 PHD_FILE: MSMg01no080_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:57 2005
(344 letters)
>mm_chr3_104017526_104018269
Length = 744
Score = 658 bits (340), Expect = 0.0
Identities = 343/344 (99%)
Strand = Plus / Plus
Query: 1 gtcagctctcggactttgcatgtttctctaagataccatttctgactcatttgacaaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcagctctcggactttgcatgtttctctaagataccatttctgactcatttgacaaggt 260
Query: 61 cagtgctagctgcagtggggacattattagatgtctgaggagagagcatgttcagtaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgctagctgcagtggggacattattagatgtctgaggagagagcatgttcagtaagt 320
Query: 121 cgatttttcactttctctttataaactaaaagaggcagcttttcttggaaaactttcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 cgatttttcactttctctttataaactaaaagaggcagcttttcttgaaaaactttcaaa 380
Query: 181 ataatattgggttttcaggacagaagagcagtgggtaggtttgccttttttccaccacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataatattgggttttcaggacagaagagcagtgggtaggtttgccttttttccaccacaa 440
Query: 241 acaagtctccaaagcaccagcctccacactgcacagcaaatcaccatcagctacagggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaagtctccaaagcaccagcctccacactgcacagcaaatcaccatcagctacagggtt 500
Query: 301 aggtcagagtatcccttccctgccaaaatactgtatctaaaaaa 344
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtcagagtatcccttccctgccaaaatactgtatctaaaaaa 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_o12.g1 MSMg01no080_o12.g1 CHROMAT_FILE:
MSMg01no080_o12.g1 PHD_FILE: MSMg01no080_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:57 2005
(530 letters)
>mm_chr3_104154273_104155201
Length = 929
Score = 986 bits (510), Expect = 0.0
Identities = 525/530 (99%), Gaps = 1/530 (0%)
Strand = Plus / Minus
Query: 1 aggtctttgaaagagctgcaagcactcttaagcactaagtcacctctctactactgacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aggtctttgaaagagctgcaagcactcttaagcactaagtcacctctctactactgacac 670
Query: 61 taggtttttaaacattccttttccctaatttgagtagcaggagggtgtagcaaagaggca 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 669 taggtttttaaacattccttttccctaatttgagtagcaggagggcgtagcaaagaggca 610
Query: 121 actgagacataaggcacactggaaaaattaacaagacacttattgtaattcacttgacct 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 609 actgagacataaggcacactggacaaattaacaagacacttattgtaattcacttgacct 550
Query: 181 cacccactaccagcaccaactctccagtttaaagagacttattgaaactcaacccccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 cacccactaccagcaccaactctccagtttaaagagacttattgaaactcaacccccaga 490
Query: 241 ctttcctgttgatttataacttatagcattcttttcttctttagcagagaggcctggaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctttcctgttgatttataacttatagcattcttttcttctttagcagagaggcctggaac 430
Query: 301 tgatttcaacttggctcctggggccagtgtattcatttggcacacagagaatggccttgc 360
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 429 tgatttcaacttggctcctggggccagtgtattcatttggtaaacagagaatggccttgc 370
Query: 361 tgaaatgttgtagaggttgttggagccaaaagaatcatctcatctcctaggaaccaatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tgaaatgttgtagaggttgttggagccaaaagaatcatctcatctcctaggaaccaatta 310
Query: 421 gaattcctgcatggcaaaattcccaattaaaaaaaaaaaaaagacaaaacaatccaaaga 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 309 gaattcctgcatggcaaaattcccaatt-aaaaaaaaaaaaagacaaaacaatccaaaga 251
Query: 481 aaaacactctctgaattattctggaactttccaccaggctgagcagagta 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aaaacactctctgaattattctggaactttccaccaggctgagcagagta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
