BAC Information

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BAC

Clone NameMSMg01-081J11
Chromosome3 (Build37)
Map Location 13,321,886 - 13,322,044
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081J11.T7 (MSMg01no081_j11.b1)MSMg01-081J11.TJ (MSMg01no081_j11.g1)
ACCAG302158AG302159
length737729
length of high quality
(start - end)
165 (69 - 233)238 (71 - 308)
definitionCHROMAT_FILE: MSMg01no081_j11.b1 PHD_FILE: MSMg01no081_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:51 2005CHROMAT_FILE: MSMg01no081_j11.g1 PHD_FILE: MSMg01no081_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCAGGTTTCTTCGGACCAGTTAGCAGAGAAGTCAGTGGACCCCCATGAG
AATCTAAAATGTTCTAGATTATAAGCAAGAATGGTGGAGCATGGGCTGGC
AATAAATGAATCATGCCTTGTTAAGAGATGTTTAAAATAAGATCTTTTTA
GTGTGTCTGAAATACAGTTTTTATTGTGAGTAGGGTGCACTACAAGCAAA
TTTGTTAAATAATGTTTAATATATACTTTAGTACGTCAGGTATGGTTGAT
CATGCCTTTAATTCCAGCACTCTTAAGGCCGAGACAGGATTATCTCTGTG
AGCAAGCCTACTTTACAAAGCAAGTTCTAGTAGAGCCAGTGCTCCATATA
TCTACCTTGTCTCATTTATCAAATCATAACAAACTAGTCAACAATACAAT
TTATTTTGTGTACCATGAAGAATTTTGTATAATTTGTATCATTTGTTTTC
TATGATAGTTCTTCTGAAAAATGTTGAATACTCTAATGTTATTACTATTT
CACTTAAAAATGGTATGTATCTTTTACTATCATGTTAATATTTAATCATA
ATATTCCAGTACCACCTAAAAAGCAAAATTTATTTCCTATATTTTCAATT
ATCTCATTAAAATCCTTACCGCTATCATTTGAAATTTTCCCTTCTATCTT
TATTATAGTTTATCTTCTTGTCTTTAATTTCCCCTCG
TTATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCAGCCACCTTATGGTGACCTTCAGGACAG
AGGTATTCTCAGCCGTGACTGGTATACTGGCTAGTTTTGTGTCAACTTGA
CACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGGGGAAATGCCTC
TATGAGATCCAGCTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAA
AGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGATTCTATA
AGAAAGCCGGCTGAGCTAGCCAGAGGCAAGCCAGTAAAGAACATCCCTCC
ATGGCCTCTGCATCAGCTCCTGCTTCCTGACCTGCTTGAGGTCCAGTCCT
GACTTCCTTGGTGATGAACAGCAGTACGGAAGCGTAAGCTGAATAAACCT
TTTCCTCCCTAGCTTGCTTCCTGTTTCTGATGTTTGTGCAAGTATACAAA
CTTTGACTAATACAGATGGTTTTCTCTCTGAATCTTTCATTCCATGTCCT
CTACTCCAGAATAATACCCCCCTTCTCATTCTCTGAGAAATGGTTCTCCT
CTCGCAGTTGAGAAAATTTTAAGCTAAGTCAATCCTCTCTCCCCTCTCCC
CTGTCCCCCCACTCATGGCCCCCTCGCCTATGCTCCCACCTCAACAACCT
CTTGATGTACCAGAATGACCTGCCCCGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_j11.b1 MSMg01no081_j11.b1 CHROMAT_FILE:
MSMg01no081_j11.b1 PHD_FILE: MSMg01no081_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:51 2005
         (165 letters)



>mm_chr3_13321680_13322244
          Length = 565

 Score =  292 bits (151), Expect = 7e-84
 Identities = 157/159 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   cagagaagtcagtggacccccatgagaatctaaaatgttctagattataagcaagaatgg 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cagagaagtcagtggaccaccatgagaatctaaaatgttctagattataagcaagaatgg 266

                                                                       
Query: 67  tggagcatgggctggcaataaatgaatcatgccttgttaagagatgtttaaaataagatc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tggagcatgggctggcaataaatgaatcatgccttgttaagagatgtttaaaataagatc 326

                                                  
Query: 127 tttttagtgtgtctgaaatacagtttttattgtgagtag 165
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gttttagtgtgtctgaaatacagtttttattgtgagtag 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)