BAC Information

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BAC

Clone NameMSMg01-082P08
Chromosome3 (Build37)
Map Location 156,461,802 - 156,462,077
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneLOC624519, LOC100040901, 4930570G19Rik, LOC100041152
Downstream geneLOC668853, LOC546818, Zranb2, Ptger3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082P08.T7 (MSMg01no082_p08.b1)MSMg01-082P08.TJ (MSMg01no082_p08.g1)
ACCAG303204AG303205
length694828
length of high quality
(start - end)
277 (99 - 375)---
definitionCHROMAT_FILE: MSMg01no082_p08.b1 PHD_FILE: MSMg01no082_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:33 2005CHROMAT_FILE: MSMg01no082_p08.g1 PHD_FILE: MSMg01no082_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGATCCGCGG
AATTCCACATAACCATGATTTTGATTTTTTTGTTTTTGTTTTTGTACACA
AGTTTTCATTTCACTTCTGCGCCAGGTTTATGTGAATGAACCCAGATGAG
CAGGAGATCCCCATCATCAGTGCACACTCAGTGCTTCGGTCCCTTCATCA
CTGCCTCAGTTAAGTTAGGACTGTTCTTTTCCTAGGCATTCTCTTTTCTA
CATCCTTAAATACAACATCTTAGCTTTTAGATTTTAATGTTAAAGTTGTT
TGTTATACTGATCCTGCTTCCTTTCCACATGGTTTACCTGGTCTAGCAAT
GCCACCCACTTTCTCAAACCTTGGCTTTGCTTTGTTTTGATTTGATTTGA
ATTGGATTGGATTGGTTTGACACGCAACAACCACACACATCTACTAGTCC
CACTAAGGGTAACGCTGGTTATATTACCTATTATTCATTAATTAAATTTA
ATACAACCCGATTTTTATCTATATTCTTTTAATTTCTTACTTCTATGTCG
TCTTCGCTTTTTCAAACAACTCACTTTTCTTAGTTAATTTAGTTCATTCA
AATTTTACACATAATTTCCATCTTATATATTCCATAAATTCACCTCCACT
CCCTCGCTCCTTTTCATCTAGTTCTCGCCTCTATCACACGTTCC
NTCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCGTCCGCGGAATTCTCGTGCTCTATTCAGAGGTAA
TGCATTTACTATACAGGGTAAGTGCATCTCACTCATCTCTCACATCACCT
GTGCATAAGTAGTATAAATTTCCTGGAAGNGCTCTCAAGTGAACCTTTTG
GATTTTTATAACATTTTTTGGAAAAATTATAAAGGGTGGAGTAACCAAAT
ATATCCTTAAAAATAAATTAAAGCCCTTCCTTCCCCCTGGGGGCTCACCA
GTGTGGAGCCACCTCGGTGGCGTTCTGTGGTTGCCTGTTTTCTCTTCTGC
TTTTTTTTACTCTGTATCTTTCTTCTTTTTCTGTGCGATTTTATTCTGTG
TATAGATTACCCCCAAACCATATTCCCGGTTCTTAGTCACATTCTCCTAT
GTAAGGAGCGTCGCGTCATAATACTTCCCATCTCCTCTTATTCTCTTTTT
TTCAGATTTTCTTCAATCACTAAAAGAAAAGAGTACAACTCTCCATCCTG
CCCGTGCGGTGGGGGCGTACTTAACCATCAATCAACCTAAATCAAACCCT
TCGTGCACCGCTTGTTTATGTTCACCGTTCATGTTCTTGCTTCCCGTGCT
TGCGCCGCCCCTCTTTATTGCACTATTAGACTACTACCCAGCCCTACTGT
CTGTTCGCTCCGTAATCACACTCTACCTCCATCCCACTACCTTATGAATG
CTGCTGTAGGCGAATGCTGTTCTCCTCCTCTTCTTCACCGCGCTTGACTC
TCAACATCCTTCTCTCTCCGCCCGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_p08.b1 MSMg01no082_p08.b1 CHROMAT_FILE:
MSMg01no082_p08.b1 PHD_FILE: MSMg01no082_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:33 2005
         (277 letters)



>mm_chr3_156461602_156462278
          Length = 677

 Score =  503 bits (260), Expect = e-147
 Identities = 272/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagttttcatttcacttctgcgccaggtttatgtgaatgaacccagatgagcaggagat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 caagttttcatttcacttctgcgccaggtttatgtgaatgaacccagatgagcaggggat 260

                                                                       
Query: 61  ccccatcatcagtgcacactcagtgcttcggtcccttcatcactgcctcagttaagttag 120
           |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 ccccatgatcagtggacactcagtgcttcggtcccttcatcactacctcagttaagttag 320

                                                                       
Query: 121 gactgttcttttcctaggcattctcttttctacatccttaaatacaacatcttagctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgttcttttcctaggcattctcttttctacatccttaaatacaacatcttagctttt 380

                                                                       
Query: 181 agattttaatgttaaagttgtttgttatactgatcctgcttcctttccacatggtttacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agattttaatgttaaagttgtttgttatactgatcctgcttcctttccacatggtttacc 440

                                               
Query: 241 tggtctagcaatgccacccactttctcaaaccttgg 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtctagcaatgccacccactttctcaaaccttgg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)