BAC Information

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BAC

Clone NameMSMg01-082P23
Chromosome3 (Build37)
Map Location 83,251,196 - 83,392,482
singlet/doubletdoublet
Overlap gene1700028M03Rik, LOC100042007
Upstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082P23.T7 (MSMg01no082_p23.b1)MSMg01-082P23.TJ (MSMg01no082_p23.g1)
ACCAG303234AG303235
length661711
length of high quality
(start - end)		246 (43 - 288)644 (68 - 711)
definitionCHROMAT_FILE: MSMg01no082_p23.b1 PHD_FILE: MSMg01no082_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:36 2005CHROMAT_FILE: MSMg01no082_p23.g1 PHD_FILE: MSMg01no082_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,251,196 - 83,251,437)(83,392,113 - 83,392,482)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGAAT
TCCTAGGTATTGCCCCATGTCATTGCACTTGCTTAGTTCTCATGTTCAAG
ATCACTAACATCATTCTCAACAATAGCGCTTTTATCTTAATTACCTCCCA
ACCTATCTCCTAAATTAACCCTTGTAATACAGTTTCAGCATAGATTTTAT
TCTGTGTGATGGACCTCTGGTTTGTCTGCTTCTAAACTCTAAGTGCCATT
TGCTCAACCAATTTGAGCCACATGGTCATTTCAGGCTTGTTCCTGGTAGC
ACCTTGGAGCCCCTCCTGCTAGGATCTCTGAGTACCATGGCACTTACTTC
TGACATGTGCCTAAAACCGTGCCATGGGCCAGCAGACCCTTTTGCACCCT
TTATTCCAAGGTTGTCCCAATCCTTAAACCTCTGTTTAGGAATGGCCCCC
TCAAAGGTTCTTTTTTCAAGAGAAGGACCTCCCTCCCCGAGAAAACCCCA
TTATGGGGTTTTTTTTTTTTGGGAGCGGCTTTTCAACAACCAACACCCCT
CTCCCGGGGTTTTTTATATTTTTCTGTTTTTTGCCCCTCCTCTTTTTCCT
TCTCCTACTTTTCGCTTTTTTTTTCCCCCTTTGCGCCTTGTCTTTCCTCC
TTTTACATCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTAGGCATCAAAAGAGGGACACATTAGCACAT
TACATCATCTTATATGCATAAATATTCACAATACACATTTATAATGCAAA
TACTAATCAAAAATATCTTAAATAATGATGAAAATAAGTTTTAATAATTT
TTCTTTAGATTCAGAAACAGTAACATTGTTGCGTCTCATTTTTAAAATGT
CACTCAAACTAAGCCAAGTATTTTGTGTATAGAGTAAATTTTGTAATTAC
AAACAGAACTGCTGAATTATTCCCCATGGTGCTCTGCATCAAGGCTTCAA
TTTTTTAAGAAAATGTAACCATTCAAGTGGTGACACAAAATGACAAAAGC
AATCCAAAGGTTTCCTAATTTTTAAAAGTTGTTATCTATTTTTAAATGTA
TTATTAGAGTCAAATGGTGGTAACATTTGGAGCCTGCTATTTAACACAGG
ATTATGTCATACAACAGGCATTGGGGAGTCCAGGCAGACCTGGCTTAGGC
CAAGGGGAGGAGTTTGAACCTTTGAACTTACCCTTAAAGAGACCATCCCT
AGCTGAGTTTGTGGTAACGAGAAACAAACTTTCCAAATAAACTTCCATTT
AGAAAACCAAAATGTATGAATTTGATGTTCTTTATTATCATGNCATGATG
GCAACAGCAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_p23.b1 MSMg01no082_p23.b1 CHROMAT_FILE:
MSMg01no082_p23.b1 PHD_FILE: MSMg01no082_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:36 2005
         (246 letters)



>mm_chr3_83250992_83251637
          Length = 646

 Score =  429 bits (222), Expect = e-125
 Identities = 237/242 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaggtattgccccatgtcattgcacttgcttagttctcatgttcaagatcact 64
           |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaggtataggtccatgtcattgcacttgcttagttctcatgttcaagatcact 264

                                                                       
Query: 65  aacatcattctcaacaatagcgcttttatcttaattacctcccaacctatctcctaaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacatcattctcaacaatagcgcttttatcttaattacctcccaacctatctcctaaatt 324

                                                                       
Query: 125 aacccttgtaatacagtttcagcatagattttattctgtgtgatggacctctggtttgtc 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 aacccttgtaatacagtttcagcatagattttattctatgtgatggacctctggtttgtc 384

                                                                       
Query: 185 tgcttctaaactctaagtgccatttgctcaaccaatttgagccacatggtcatttcaggc 244
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcttctaaactctaagtgtcatttgctcaaccaatttgagccacatggtcatttcaggc 444

             
Query: 245 tt 246
           ||
Sbjct: 445 tt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no082_p23.g1 MSMg01no082_p23.g1 CHROMAT_FILE:
MSMg01no082_p23.g1 PHD_FILE: MSMg01no082_p23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:36 2005
         (644 letters)



>mm_chr3_83392113_83393156
          Length = 1044

 Score =  716 bits (370), Expect = 0.0
 Identities = 370/370 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaggcatcaaaagagggacacattagcacattacatcatcttatatgcataaatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agtaggcatcaaaagagggacacattagcacattacatcatcttatatgcataaatattc 311

                                                                       
Query: 61  acaatacacatttataatgcaaatactaatcaaaaatatcttaaataatgatgaaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acaatacacatttataatgcaaatactaatcaaaaatatcttaaataatgatgaaaataa 251

                                                                       
Query: 121 gttttaataatttttctttagattcagaaacagtaacattgttgcgtctcatttttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gttttaataatttttctttagattcagaaacagtaacattgttgcgtctcatttttaaaa 191

                                                                       
Query: 181 tgtcactcaaactaagccaagtattttgtgtatagagtaaattttgtaattacaaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tgtcactcaaactaagccaagtattttgtgtatagagtaaattttgtaattacaaacaga 131

                                                                       
Query: 241 actgctgaattattccccatggtgctctgcatcaaggcttcaattttttaagaaaatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 actgctgaattattccccatggtgctctgcatcaaggcttcaattttttaagaaaatgta 71

                                                                       
Query: 301 accattcaagtggtgacacaaaatgacaaaagcaatccaaaggtttcctaatttttaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  accattcaagtggtgacacaaaatgacaaaagcaatccaaaggtttcctaatttttaaaa 11

                     
Query: 361 gttgttatct 370
           ||||||||||
Sbjct: 10  gttgttatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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