BAC Information

Click to search

BAC

Clone NameMSMg01-083D11
Chromosome3 (Build37)
Map Location 51,892,763 - 51,893,017
singlet/doubletsinglet
Overlap genenone
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6, Lhfp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083D11.T7 (MSMg01no083_d11.b1)MSMg01-083D11.TJ (MSMg01no083_d11.g1)
ACCAG303400AG303401
length720756
length of high quality
(start - end)
260 (41 - 300)307 (69 - 375)
definitionCHROMAT_FILE: MSMg01no083_d11.b1 PHD_FILE: MSMg01no083_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:53 2005CHROMAT_FILE: MSMg01no083_d11.g1 PHD_FILE: MSMg01no083_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGAAGTCGGTACTCCCAGAGAAGAAAGGGATGAGCCAAAAGGTTTGGG
TCTCCCTATAAATTAAACCCAGCGTCAACAGGGATCAGAGCAAGAAACTT
TAAGTGTCCAGTTTTCCCTTCTGTCCACACGGTCCCTTCCACTCCCTTCC
TCCGTGCCCTGTGAATAAATAGCCAAGTAGGTTTGGTGTTCATTACTCTT
TTGCCGTGAAGACAAAGGTGACTCATCAGGCTAAATCGGAGGGGGGGGGT
GGTNATTTACTTCTTTTTTGAAATCCCAAACATTTTATATGACTTATTTA
TTTAAATTCTCCTTCTGTACTCATTATTTCTTTATCACTCCGTTTATTTT
TGTTTTCCCCCCCCAACAATTACCTAAATTGGCATTTAATTCTCCTTTCC
TCTTTTTTTTCTACTTCATATCTATCATTTTTCATTTTATTTCTTTAATC
TTGCTCCTCTTTTTTTTTTCCTCTTTTTTCTTGATATTCTACTTATATCA
ATATTATATTACTTATTATTTTTATGTCTTTTATTGTATTTTTTTTCATT
CATTAAATTCTCCTACTTCTTTATTCATTTCCTTAGTTCTTGTATTATTT
TACCTTCTTATATTTTTTACACCTTATAACATGTTCTTTTGTTTACTTAT
TATTTTGTGCTATTTCTTTT
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTATTCCTTTGAGATGTAGGCATGTTCTCTC
AGGATACTTGGAGCTAAGCTGGTGGCTAGCAGTGCCAGCAATCTTTTCAC
CTCCGGCCCCACCCCCAAACTTGTGTCACCCCCAGCTCTGTACATGGATT
CTGAGGATTTGAACCTGGGTCCTTATGCTTGCTCAGCACAAGCTCTGACC
CACTGAGCCATCTCCCCTGCCCTTAATCACTGATGTTTTAAAAATGTGTG
TTTTCATTTGGGAATATACATATATATATATACATTTATATATATACATA
TGTGTGTGTGTGTGTGTGTGTATGCGTATGTTTCTTTTTTTCTTTTTCAT
TTTTCCCCCCCTTTTTATTTTGTACAGTCTTGGCTTTGTACCATTCTGTT
TTCTTGTCAATTATTTTTATTCTTTGATTTCCGATTTCTTTTTTTTTTCT
GTTTGACTATTTTTTTTTCATTGTATCATTGTAATATCTGTTTGTTTTCC
GTTGCTGATCTTTCTTCGCCATACTTCTAGTTTTCTCCCCTGCTCCTCTT
ATGTGTTACTTGTCTCTCGTGTATCTCTTTTTTCGCTATATTTTTGTAGT
TTCGTTAAGCGTGTTTAAGATATATGTTTTTCATTTCTTTTACTTTTACT
GTTATACCATATTTACTTTTTTTATTTAATTTTTCCATTACCTTCTTGTA
TGTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_d11.b1 MSMg01no083_d11.b1 CHROMAT_FILE:
MSMg01no083_d11.b1 PHD_FILE: MSMg01no083_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:53 2005
         (260 letters)



>mm_chr3_51892558_51893217
          Length = 660

 Score =  468 bits (242), Expect = e-136
 Identities = 252/256 (98%), Gaps = 3/256 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgaagtcggtactcccagagaagaaagggatgagccaaaaggtttgggtctc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaattctttgaagtgggtactcccagagaagaaagggatgagccaaaaggtttgggtctc 401

                                                                       
Query: 65  cctataaattaaacccagcgtcaacagggatcagagcaagaaactttaagtgtccagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cctataaattaaacccagcgtcaacagggatcagagcaagaaactttaagtgtccagttt 341

                                                                       
Query: 125 tcccttctgtccacacggtcccttccactcccttcctccgtgccctgtgaataaatagcc 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 340 tcccttctgtccacacggtcccttccactcccttcctccgtgccctgtgaataaatag-c 282

                                                                       
Query: 185 aagtaggtttggtgttcattactcttttgccgtgaagacaaaggtgactcatcaggctaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagtaggtttggtgttcattactcttttgccgtgaagacaaaggtgactcatcaggctaa 222

                           
Query: 245 atcggag--ggggggg 258
           |||||||  |||||||
Sbjct: 221 atcggagatggggggg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)