BAC Information

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BAC

Clone NameMSMg01-083G09
Chromosome3 (Build37)
Map Location 33,039,486 - 33,039,967
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083G09.T7 (MSMg01no083_g09.b1)MSMg01-083G09.TJ (MSMg01no083_g09.g1)
ACCAG303531AG303532
length705693
length of high quality
(start - end)
314 (39 - 352)485 (70 - 554)
definitionCHROMAT_FILE: MSMg01no083_g09.b1 PHD_FILE: MSMg01no083_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:07 2005CHROMAT_FILE: MSMg01no083_g09.g1 PHD_FILE: MSMg01no083_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGACCGCGGAATTCCA
AACTTCCCGCTTTACCACATCAAACCATTTCTGAGGGTCAGGAAATCGGG
AGTAGCTACCTGGAAGGTTCTACAGTTCAGGATGTCTCATGAATTTGGGA
TTAAGCTTTTAGCTGAGGCCACAATCTTTCAAAGCTCCAAAGGTCTGGAA
ATCTACTCACAGGGCCTGTCTCCAAGGCATGGGGAGGAGCCTCAGTTCCT
CTGACTGTTAGTAGAGAGTTTTAGCTTCTCACCTTATTCCTAATGTCATG
AAATGGTACCTGTTATTTCCCACAGGGTAGTTGTTTGAGAGCAAGTAGGG
AGGTGGTCATGGTACACTCTATGAAGTTTACTTCAAGGTCATGCCCACAG
TTTCTACCCCTTTATAAGTTGAGTCATCACACCCAGGCCACACTAAAGAG
GAACTACGTGCCACATATGAAGATTGAGTGGATATTCTATATATCCACCA
GTAACATCTAAGTGATGCTAGAGAGAAGGTTATTGTGTCTCCTGAATAAG
CTCAGGTCTCTAAGAAGACAAAGAGGCAGAATGTATTGCAATTTCTCACT
ACATATGGCAATCTTACACTATTTCGCCGGTTCTTTTTTTTCTATTTTAT
TCTCTTTTTACTCTCCTTTTTCTTTCTCTTATTACTTTCTTCTTATTTTT
TTTTT
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTTATCCTTAAATCACTTCTGACAACCTG
ATTCATGATATATGTCTTTGGTTACATTATTAAAAACCCACTCTCTTCCC
CCAACACTGTCATTTAGCTTGTAGAAAGACCCTCCAGAGTACTGGTATAC
TTAAAGAATAGCCATTCTTAAAAGGTTTAACTGCATCCTGTGTGTACCTG
ACTCTAGTCACACACATGAACAAACACAGTGCAAACAACATTAATATTTT
CAGTTAAAATCCCAGCACATTCTTTATAGCATAGACCAGGAGCATGCATA
TTGACTGAGGCTGCTTCTAGCTTTGGGCTCATTGGAAAGGCTAATATGAA
TTATCTGCCCTAAGGCAGGTATAAAACAGAAAACCTTTGAGATCATTTCC
TATGCCTTCGAAATCTTCTCTTTTCTGTGATCAAGATTTTTTTTAAAGTG
CTTTGTAAATAACAATCTGGAGTAGATGGGGGCTGTTCACATGAAGCCTT
AAAAATAGTCCAATTAAAACTCCTGCAGAGCCTTTGTGTTTGCAACTTAT
TGCTTCTGCAAGTGTATTCTTGGGCCTGACTCCATAAGGTTAACTGCTCT
ACTTGCGGTACAAGCTTCCCTCCTACTCTTTTAACTATTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_g09.g1 MSMg01no083_g09.g1 CHROMAT_FILE:
MSMg01no083_g09.g1 PHD_FILE: MSMg01no083_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:07 2005
         (485 letters)



>mm_chr3_33039286_33040167
          Length = 882

 Score =  891 bits (461), Expect = 0.0
 Identities = 478/485 (98%), Gaps = 3/485 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtttatccttaaatcacttctgacaacctgattcatgatatatgtctttggttacatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tgtttatccttaaatcacttctgacaacctgattcatgatatatgtctttggttacatta 623

                                                                       
Query: 61  ttaaaaacccactctcttcccccaacactgtcatttagcttgtagaaagaccctccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttaaaaacccactctcttcccccaacactgtcatttagcttgtagaaagaccctccagag 563

                                                                       
Query: 121 tactggtatacttaaagaatagccattcttaaaaggtttaactgcatcctgtgtgtacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tactggtatacttaaagaatagccattcttaaaaggtttaactgcatcctgtgtgtacct 503

                                                                       
Query: 181 gactctagtcacacacatgaacaaacacagtgcaaacaacattaatattttcagttaaaa 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 502 gactctagtcacacacatgaacaaacacagtgcaaacaacataaatattttcagttaaaa 443

                                                                       
Query: 241 tcccagcacattctttatagcatagaccaggagcatgcatattgactgaggctgcttcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcccagcacattctttatagcatagaccaggagcatgcatattgactgaggctgcttcta 383

                                                                       
Query: 301 gctttgggctcattggaaaggctaatatgaattatctgccctaaggcaggtataaaacag 360
           ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||
Sbjct: 382 gctttgggctcattggaaaggctaatatgaattatctgtattaaggcaggtataaaacag 323

                                                                       
Query: 361 aaaacctttgagatcatttcctatgccttcgaaatcttctcttttctgtgatcaagattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaacctttgagatcatttcctatgccttcgaaatcttctcttttctgtgatcaagattt 263

                                                                       
Query: 421 tttttaaagtgctttgtaaataacaatctggagtagatgggggctgttcacatgaagcct 480
           ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
Sbjct: 262 tttttaaagtgctttgtaaataacaatctggagt---tgggggctgttcacatgaagcct 206

                
Query: 481 taaaa 485
           |||||
Sbjct: 205 taaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 882
Length adjustment: 10
Effective length of query: 475
Effective length of database: 872
Effective search space:   414200
Effective search space used:   414200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)