BAC Information

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BAC

Clone NameMSMg01-083J19
Chromosome3 (Build37)
Map Location 65,121,795 - 65,122,267
singlet/doubletsinglet
Overlap geneKcnab1
Upstream gene4930518C23Rik, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083J19.T7 (MSMg01no083_j19.b1)MSMg01-083J19.TJ (MSMg01no083_j19.g1)
ACCAG303683AG303684
length713709
length of high quality
(start - end)
345 (60 - 404)476 (65 - 540)
definitionCHROMAT_FILE: MSMg01no083_j19.b1 PHD_FILE: MSMg01no083_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:23 2005CHROMAT_FILE: MSMg01no083_j19.g1 PHD_FILE: MSMg01no083_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTG
GTTGACCGCCTGCTATACTACACATTTGGGAACCACCAGTATCTGAATGG
CAGTTAGAGTCACAAGATGAGAGGACAGGACCAAGAAAGACAAAGGGAAA
TGAGAAGAGGGTCTCTACTGAGACCCCATACTGCAGCATTTAGATGTTAT
AGAGATGAAGCCTGGCATTGTGGTAGTGACTGTAATCCCAGTATACAGGA
GGCTGTGGGAGGAGGATCACCATGAGTTTAAGGTCAGCCTGTAAGGCAAA
ACAAGTGGACTGCAAAGCAAGAGCCTGTCTTAACAAACAACACCCATCCA
CCCCCATTCCCCACCCCTGCTCCCACAGATAATAGAATCTGGCAAAAGTA
ATTGACCACTTAGGAACAAGATAGGAGACAGAAACCAAACATCATGTCCT
GGAAGCAGATGCTGGCCTCTTTAGTGCAGCTCATGGACCAAATAAAATAG
AATATAAGGACTAAACATTGGATTTATCAGTAGAGCAGGGTCCAGAGACT
TTGACAAAGCAATACCAAGATGCGTAGGGCAGATCTTGTAGCTCACTGCT
ATGGTAGCTGGTGAGCGAGAGTGCAAGTCACATGGCTGAGGCTGATGAGA
TGGATCTGGTAGGAGAAATCCTTGCCTCAAAGTAGAGGAAGGTTGCCCGT
AATGCTTGTTTGA
GTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGTCCAAGAGGCCAACATATCCACCACCTCATCAT
CGGCTTTTGACATCTCAGCTCCCTGGAAGCTCTCGATGCTTGTTAGTATC
TGACAGCATCCATGCACTGAAGCATTCGGCGTGTATTCCAGCTGTCACTA
CTTGGCTTTAATGGTGCCTGGCCTGGGAATTCTAAGAAGGTCGTTCTGGA
GCCTGTATTTATTGCCCACGGTTGCAACACTAGAGGGCGCTAGTCCCAGT
AAATTCAAAACTAGTGCTGCTATTCTGCTATCCCTAGCTTAGGTTTGTTG
CAATTGGTACCGCTGTATGTGGTAGATTAGGGGACTGCCTAGATAAGGTG
ATCCAATCTCAGGACCGAACACCTCATCTACTATCACTAGCCTGCAGTCA
GGAACAACAGGGTTTTAAGCATCCCTGAGCCTTACCACAAGGGATGCAGC
TCAAAAGGCCAGGTTTGGGTGCCTCTCTGGAGCCCTTTTAGGTTCCTGAG
TCCAGTGTAACTATGATTCCATTGCCTGTCTGATGATGTAGTCCCTTTGG
CTGGACATCACTGCATCCAGTTACAGGCAATGCATACTGAAATTTCATGT
GACATTCAAGCTTTTCTGCATGTGTGTTGTTCATGGGAAGAACCTACAGC
CCCAGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_j19.g1 MSMg01no083_j19.g1 CHROMAT_FILE:
MSMg01no083_j19.g1 PHD_FILE: MSMg01no083_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:23 2005
         (476 letters)



>mm_chr3_65121595_65122470
          Length = 876

 Score =  891 bits (461), Expect = 0.0
 Identities = 470/473 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtccaagaggccaacatatccaccacctcatcatcggcttttgacatctcagctccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtccaagaggccaacatatccaccacctcatcatcggcttttgacatctcagctccct 260

                                                                       
Query: 61  ggaagctctcgatgcttgttagtatctgacagcatccatgcactgaagcattcggcgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagctctcgatgcttgttagtatctgacagcatccatgcactgaagcattcggcgtgt 320

                                                                       
Query: 121 attccagctgtcactacttggctttaatggtgcctggcctgggaattctaagaaggtcgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccagctgtcactacttggctttaatggtgcctggcctgggaattctaagaaggtcgt 380

                                                                       
Query: 181 tctggagcctgtatttattgcccacggttgcaacactagagggcgctagtcccagtaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggagcctgtatttattgcccacggttgcaacactagagggcgctagtcccagtaaat 440

                                                                       
Query: 241 tcaaaactagtgctgctattctgctatccctagcttaggtttgttgcaattggtaccgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaaactagtgctgctattctgctatccctagcttaggtttgttgcaattggtaccgct 500

                                                                       
Query: 301 gtatgtggtagattaggggactgcctagataaggtgatccaatctcaggaccgaacacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatgtggtagattaggggactgcctagataaggtgatccaatctcaggaccgaacacct 560

                                                                       
Query: 361 catctactatcactagcctgcagtcaggaacaacagggttttaagcatccctgagcctta 420
           ||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 561 catctacaatcactagcctgcagtcaggaacaacagggttctaagcagccctgagcctta 620

                                                                
Query: 421 ccacaagggatgcagctcaaaaggccaggtttgggtgcctctctggagccctt 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccacaagggatgcagctcaaaaggccaggtttgggtgcctctctggagccctt 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)