BAC Information

Click to search

BAC

Clone NameMSMg01-083P10
Chromosome3 (Build37)
Map Location 26,238,391 - 26,238,743
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083P10.T7 (MSMg01no083_p10.b1)MSMg01-083P10.TJ (MSMg01no083_p10.g1)
ACCAG303945AG303946
length717724
length of high quality
(start - end)
355 (43 - 397)225 (75 - 299)
definitionCHROMAT_FILE: MSMg01no083_p10.b1 PHD_FILE: MSMg01no083_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:51 2005CHROMAT_FILE: MSMg01no083_p10.g1 PHD_FILE: MSMg01no083_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACACTTTTTCTAATTCTTTTGTTTATTTTTGCATAACTTCATAATTAA
CTTCCTTGATTTGATGTTTTCCTCTCTTATTGTTAGCATTCACTATACAA
TTGTGACTATACAACTTGAGTTTCTGAAGGATCAGGTCCAAATGTCATTG
TTTGATACACAAGTCTCCTCATTACCTTTTTCTTTTTACATACATGTTTA
TTTTTGACATTTCTTTCCACACCTCCTCATGATTCAGATAAACTACTTGT
CACTAAGAATACATCTGACTCTTTGGTGAGGCAATGTCTTCATGTGTTTC
ACTCTTTTCCTTATAATGTTCTAAGGAACATATTTGTACTGTGCATCATG
TACTCTAGATATGATCCTCCTTCAAAGTCTGCCAGCCTTTAAGTGGGAAG
TGGGCATGTCTTTTAATCTTACAGTAGGTACAATACTAACTCTACTGAGG
AACTTCAAAAGGTTGGTGATTAACAACTCACTTAACTAGATTACCAGATA
CCTACTGGATCCTGTAAGTATAATTTAAATGCAACTGATATGGTGGAATG
AATTTAATGCTTCTTAGGACCTTATATGTGATTGACTTGTATCAATATAA
TCTAATTATTTACTCGTGTTCCCACAATCACATTCATATACAACAATATC
TTTCTCTCCTCTCTACC
TTCGATACAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAGCACTGTTAGTGAAAGTGAAAA
TTATTAAGTCATTAAAAAGAACAGTAAGAAGATTCATCAAAAGCCACATG
GCACTGATAGCTCTGTATTTCCAAAGGAAATAAAATTATCACATAAAAAA
ACAACTTTACTTTCTCATACTTTTATAGCATGAGTCTCTGTAGCCAAGAT
AGAGAACTGACATACTCATTCAGTGATGGATGAAGGCCTTAAAGAAGAGG
TGGTGAGCAACATAGTCAACAGGCCAGACCCCCTGAAGATCTCGGGGACT
GTACCACCAACCAAAGAGTACACATGGAGGGACCCACGGATCCGGCCGCA
TTTTGTGACAGACAATGACCTTGTTGGACATCAGTGGGAGAAGAGGCCCT
TAGATCTGAGGGTTTTTGATGTCCCAGAGTACGGAAATGCCACGGTGTAA
AGATGTTAGGTCGCGTAGTTGATAACCTATATATTTTATCGAATATATCT
ATTTATACTCTCTTTTTAACTTTTCTTATTTTTCTTAATACTATCTTTCA
AATTCTAATATATAATTAATTAATATTTTTTTATTTTTTAATATTAAACT
TATATATTATATACAATTTTACTATAATAATCATAACCTCATTTTATTAT
TTATTTCTATACAATTTATCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_p10.b1 MSMg01no083_p10.b1 CHROMAT_FILE:
MSMg01no083_p10.b1 PHD_FILE: MSMg01no083_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:51 2005
         (355 letters)



>mm_chr3_26238187_26238943
          Length = 757

 Score =  598 bits (309), Expect = e-175
 Identities = 342/353 (96%), Gaps = 2/353 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacactttttc-taattcttttgtttatttttgc-ataacttcataattaacttc 62
           |||||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 557 gaattcacacttcttcataattcttttgtttatttttgcaataacttcatatttaacttc 498

                                                                       
Query: 63  cttgatttgatgttttcctctcttattgttagcattcactatacaattgtgactatacaa 122
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 497 cttgatttgatgttttcctctcttattgctagcattcactatacaattgtgactatacaa 438

                                                                       
Query: 123 cttgagtttctgaaggatcaggtccaaatgtcattgtttgatacacaagtctcctcatta 182
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 437 cttgagtttctgaaggatcaggtccaaatgtcattgtttgataggcaagtctcctcatta 378

                                                                       
Query: 183 cctttttctttttacatacatgtttatttttgacatttctttccacacctcctcatgatt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cctttttctttttacatacatgtttatttttgacatttctttccacacctcctcatgatt 318

                                                                       
Query: 243 cagataaactacttgtcactaagaatacatctgactctttggtgaggcaatgtcttcatg 302
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cagataaactactcgtcactaagaatacatctgactctttggtgaggcaatgtcttcatg 258

                                                                
Query: 303 tgtttcactcttttccttataatgttctaaggaacatatttgtactgtgcatc 355
           ||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct: 257 tgtttcactcttttccttagaatgttctaagaaacatatttgcactgtgcatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 757
Length adjustment: 9
Effective length of query: 346
Effective length of database: 748
Effective search space:   258808
Effective search space used:   258808
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)