BAC Information

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BAC

Clone NameMSMg01-084F10
Chromosome3 (Build37)
Map Location 140,765,468 - 140,921,493
singlet/doubletdoublet
Overlap genePdha2
Upstream geneLOC229883, LOC621343, 4930590L14Rik
Downstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F10.T7 (MSMg01no084_f10.b1)MSMg01-084F10.TJ (MSMg01no084_f10.g1)
ACCAG304221AG304222
length704786
length of high quality
(start - end)
449 (83 - 531)265 (136 - 400)
definitionCHROMAT_FILE: MSMg01no084_f10.b1 PHD_FILE: MSMg01no084_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:20 2005CHROMAT_FILE: MSMg01no084_f10.g1 PHD_FILE: MSMg01no084_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,765,468 - 140,765,916)(140,921,230 - 140,921,493)
sequence
GCGGCGCTATACGACTCCTATATCGAGAGGATCCGCGGAATTCTCTGACC
TTCCTTGAACAGATGAAAGACATAAAATTCACGAATACTTTCCACCAATT
ACAAACATACAAATAACTGTTACATAACTTACCACAAATACACACTTAAA
AGAGCAGATGTTAAAAGAATAAAAGCAGGCTGCTTCTGACCTGAATATTA
CATGTTGTCCTCCTTAGGTAAGATGAGGAACATTTGTGTTGACTAGACAT
CAGTTCTTCTATAAAGAATTTAGAATTTGGAATTTCCATTAAATATCAAT
TGAAGAAATAGTAAATGTATGACAAACACTTATTTTGGAGTATTAAAAAA
TAGAGAACTAAGAAATCAGAGAGGTGCCATGTCTTCTAAACTTTTGTCAT
TAAGAACGCATGAGTTATAGTCATCACAATAAAATTTTTATTTGTGGCAA
ATGTTAAGCTTTGTGCAACATTAGCTCAACTCTAAAATATTGAGTCATGG
TATCTCAACCACAAGACACTTTTTTAATGTGCTGTGTGCAATAAAAGAAT
CTGGCATTTCCATTTGGGAACATGTAACAAACGTTGTATCCGTCTAATAT
GTTGTTGTGACATAACTAGGAGCTTTGCCAAGGTATTTGGTGCAAGCAGA
GAATGTCATGTTCAAAAATCCTCTGTGATATTGTCATTGAACAGAACATT
AGAG
TTTTTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTNNNNCNCNGCT
TCNNNNNNCCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTACTGAGCAC
ACCTAATAATTTAAACGTAGTATTCTGTATTCTGTAATTAACAGAATTAT
CAGATGCAATATTCTCAGTATCTCTTTGAGGTCAGACAGATAAGTTGATT
CTACTCAAGCTGTTTAATACTCAAAATGTCCGTGATTCTAAATAGCAGAG
ACATTTTAGAGCTAGAATTAGAACTCAGATTTATCTTCTATTAAGCTTGT
GGCGGAGATGGCTGACTCTTCACCAACATCTGACCTCCCCATCCTTGTAA
TAATCAGGGTTTAATGGCGATGAATAGGTTGGCTGTGTTCTTTGCTGTAG
GAAGAATACAAACGAGTTTCTCTGTAGCACATAGAGGAATTCTTCTGGCA
AAAGACCATAAAGGTAATGAAGGTGTCCTCTGTTACTTTTCCTTGTCACC
ACCCGTCTTACCAATATGGTTATGGGCAAAGGAACTACCATAATGTATTT
GCATCTGAAAAATCAAAGCTGGGTGATCAGAGGACAAGGAAGAGGATGAG
GAATAGAAGGAGGACTAGGATGTATAAATCCCGTCAGACTTATCATATTT
ATACGTATGGTATTCACTTGTTAATATCCAAATCTTCCACGGACCTACCG
TGCTAATAAACATAATATGATCCTCTCCTTTTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f10.b1 MSMg01no084_f10.b1 CHROMAT_FILE:
MSMg01no084_f10.b1 PHD_FILE: MSMg01no084_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:20 2005
         (449 letters)



>mm_chr3_140765268_140766116
          Length = 849

 Score =  799 bits (413), Expect = 0.0
 Identities = 440/449 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatactttccaccaattacaaacatacaaataactgttacataacttaccacaaataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatactttccaccaattacaaacatacaaataactgttacataacttaccacaaataca 260

                                                                       
Query: 61  cacttaaaagagcagatgttaaaagaataaaagcaggctgcttctgacctgaatattaca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cacttaaaagagcagatgttaaaagaataaaagcaggctgcttcggacctgaatattaca 320

                                                                       
Query: 121 tgttgtcctccttaggtaagatgaggaacatttgtgttgactagacatcagttcttctat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 tgttgtcctccttaggtaagatgaggaacatttgtgttgactagacatcaattcttctat 380

                                                                       
Query: 181 aaagaatttagaatttggaatttccattaaatatcaattgaagaaatagtaaatgtatga 240
           |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtatttagaacttggaatttccattaaatatcaattgaagaaatagtaaatgtatga 440

                                                                       
Query: 241 caaacacttattttggagtattaaaaaatagagaactaagaaatcagagaggtgccatgt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 caaacacttattttggagtattaaaaaatagagaactaagaaatcagagaggtgtcatgt 500

                                                                       
Query: 301 cttctaaacttttgtcattaagaacgcatgagttatagtcatcacaataaaatttttatt 360
           |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 501 cttctaaacttttgtcattaagaatggatgagttatagtcatcacaataaaatttttatt 560

                                                                       
Query: 361 tgtggcaaatgttaagctttgtgcaacattagctcaactctaaaatattgagtcatggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 561 tgtggcaaatgttaagctttgtgcaacattagctcaactctaaaatattgagtcatggtg 620

                                        
Query: 421 tctcaaccacaagacacttttttaatgtg 449
           |||||| ||||||||||||||||||||||
Sbjct: 621 tctcaatcacaagacacttttttaatgtg 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no084_f10.g1 MSMg01no084_f10.g1 CHROMAT_FILE:
MSMg01no084_f10.g1 PHD_FILE: MSMg01no084_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:21 2005
         (265 letters)



>mm_chr3_140921030_140921694
          Length = 665

 Score =  503 bits (260), Expect = e-147
 Identities = 263/264 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttactgagcacacctaataatttaaacgtagtattctgtattctgtaattaacaga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 464 tcatttactgagcacacctaataatttaaacgtagtattttgtattctgtaattaacaga 405

                                                                       
Query: 61  attatcagatgcaatattctcagtatctctttgaggtcagacagataagttgattctact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 attatcagatgcaatattctcagtatctctttgaggtcagacagataagttgattctact 345

                                                                       
Query: 121 caagctgtttaatactcaaaatgtccgtgattctaaatagcagagacattttagagctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 caagctgtttaatactcaaaatgtccgtgattctaaatagcagagacattttagagctag 285

                                                                       
Query: 181 aattagaactcagatttatcttctattaagcttgtggcggagatggctgactcttcacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aattagaactcagatttatcttctattaagcttgtggcggagatggctgactcttcacca 225

                                   
Query: 241 acatctgacctccccatccttgta 264
           ||||||||||||||||||||||||
Sbjct: 224 acatctgacctccccatccttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)