BAC Information

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BAC

Clone NameMSMg01-084F12
Chromosome3 (Build37)
Map Location 84,273,825 - 84,274,175
singlet/doubletsinglet
Overlap gene6330505N24Rik
Upstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream geneArfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F12.T7 (MSMg01no084_f12.b1)MSMg01-084F12.TJ (MSMg01no084_f12.g1)
ACCAG304225AG304226
length696804
length of high quality
(start - end)
347 (47 - 393)50 (107 - 156)
definitionCHROMAT_FILE: MSMg01no084_f12.b1 PHD_FILE: MSMg01no084_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:21 2005CHROMAT_FILE: MSMg01no084_f12.g1 PHD_FILE: MSMg01no084_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATATCCAGAGAATCCGCGGAATTCAGACTCCTGTCCCAGAACT
GCCATGTGGGTGCTGGGAACCGAACCTGGGTCCTCTGCTAGAGAATAAGT
GCTCTTAACCACTGAGCCGTCTTTTTAGCCCCCTTGCGTGACTCTTAAAG
ATAACAATATGGTTCATGGTTTATCAAGTTGGTGCTAAAGAAAATGAAAG
GAGACGCAAACAGAACAGACCCAGGGTGAAGGATCCATCTTCCTAGGTGA
GGTCAGATCAGAATGGGGCTCGCCACCTGTCATTCACCATCGTGCCTGTG
TGGCACCAAGTGACTATTCACACAGTGTAGATGGTGGACCGGAAGAAGAG
GATGGGAGTGAGAGGAAGCAGGAAGAGGAGGAGTTAGGAGCACGCAGGGA
GGCTACAAGAACGATGGCTCTTTCTAGATCTATGAGCAACGCTGCTTCAC
CCTCCCACGCCCTCATTTGGGAACCAGTCATTCTCCTGTAATCATGATTA
CATTCCCATTACGTCCTGAGATTCTGGGACGTGCTCACAATGCATAGCTG
TAGAACTATATAGTGCGTGTGGATTAAAACAATACATATACTTTAGGTGT
CTTTCTCCCCGCCCCCTCCTAAACTAATGTGTTCCGATTGATAGTCTTCT
ATAGCTGAGACTGTGTAGAGCTGAGTCAGTTACCAAGTTGACTGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCG
AATTCCTGGTTAACCTGAGCCACACAATGATACACTCAAACATCAACAAA
ACAACACCTTACCGAACAAAAGCACCAGAACGCAGCTTGTGCAGCTCTGG
GGGGGATGCTGGCTGGGTGTCTACCCCTTCCCCCTTTCTCTCCCTCTCTT
TCTTCCTCTTCCTTCTTCCTTCTTCCTTTCTTCCCTTCTTTTTCTCTTTC
CTCCTTTCTCTCTTTCCTCCCCTTCTCCTCTCTTCTCTCTCCTCCCTCTT
TCTTTTCCTTTTTTTTTTCTCCCTCCTCCTTCTCTCCTTCTCTCTCTTCT
TCCTCCTTCTCTTCTCCCCCCTTCCTCTCTCTCCTCCCACTCCCCCCCCT
CCCTCCTCTTCTTCTCTTCCTCCCCCCCCTTCTCCTCTCTCCTTCTCTCC
TTTTCTTTTCTCTCTTTCCTCTTCTCCTTCTCCTTCTACCTCTTCTTCTT
TTCTCATTCCTTCCCCCCTTCTTTCTTCTTCCTCCTTCCTCTTTTTTCTT
CCTCCTTCTCCTCTTTCTCTTTCCCTTCCTCTTCTCCCCTCTTTCTTTCC
CCTCCCTTTCTCCCTCTCTCCTTCTCCCTCCTCTCTTCCTTCCCCTCTTC
CCCTTCCCTTCCCCTCTCTCCTTCTCCCCTTCCCCTCCTCTCTTCTCTCC
TCCCTCCTCCCTCCTTCCCTTCCTTCCTTTCACTCCCTCTTTCCCCCCTT
CTTTCTCCCCCCTCCCTCTTCTCTCCTCCCTCCTCTTCGCTCCACCTCTT
CTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f12.b1 MSMg01no084_f12.b1 CHROMAT_FILE:
MSMg01no084_f12.b1 PHD_FILE: MSMg01no084_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:21 2005
         (347 letters)



>mm_chr3_84273539_84274289
          Length = 751

 Score =  625 bits (323), Expect = 0.0
 Identities = 343/353 (97%), Gaps = 9/353 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactgccatgtgggtgctgggaaccgaacctgggtcctctgctagag-aataagtgctct 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 637 aactgccatgtgggtgctgggaaccgaacctgggtcctctgctagagcaataagtgctct 578

                                                                       
Query: 60  taaccactgagccgtctttttagcccccttgcgtgactcttaaagataacaatatggttc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 taaccactgagccgtctttttagcccccttgcgtgactcttaaagataacaatatggttc 518

                                                                       
Query: 120 atggtttatcaagttggtg----ctaaagaaaatgaaaggagacgcaaacagaacaga-- 173
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||  
Sbjct: 517 atggtttatcaagttggtgaactctaaagaaaatgaaaggagacgcaaacagaacagatc 458

                                                                       
Query: 174 cccagggtgaaggatccatcttcctaggtgaggtcagatcagaatggggctcgccacctg 233
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccc--ggtgaaggatccatcttcctaggtgaggtcagatcagaatggggctcgccacctg 400

                                                                       
Query: 234 tcattcaccatcgtgcctgtgtggcaccaagtgactattcacacagtgtagatggtggac 293
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tcattcaccatcgtgcttgtgtggcaccaagtgactattcacacagtgtagatggtggac 340

                                                                
Query: 294 cggaagaagaggatgggagtgagaggaagcaggaagaggaggagttaggagca 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 cggaagaagaggatgggagtgagaggaagcaggaagaggaggagttaggagca 287


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 751
Length adjustment: 9
Effective length of query: 338
Effective length of database: 742
Effective search space:   250796
Effective search space used:   250796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)