XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTCCTTTGCCATACAGCTTCAATTCTTTCAGTAATTTTCCGTATTGG
CTGTGTCTCTAGGGGAGATAGAGTAGAGACACGGGATTCTACCCCTCTTG
TAAGCAGGAAATGCTAGCAGGCACTAAGTCTGGCCTGAGGCTTTGATGAC
AAGCACTAGACTTGGGTGGTCCGGATATCATATCTCCACAAAGACTGTTC
CTTAGTTCAAAAATATTGGTGGGAAAAATATTCAGAGATCAAATGTACAT
TCAAGGTGGGTTCCCTGTGCCTCCTAGTGTGGGTCCCACTGACACACACA
GCAACTCCTGTGCAGCTTAATGGAAAAGAACATCACACACACACACACAC
ACACACACACACACACTCTCACACATTTTTACACACACACACACACACAT
TAAACACAGATCACAAAGAAATAGTCCAAAAGACTGTTGTGTTTTCTAAA
GCAATGGTACATGTGTAAGGAGAGGGGATTCGGTCTTCAAAAATGCCAAG
GTCACTCTGGTGTAAGACACCGATCATGCCAAATGCTTATTTTCGGCAAG
AGCAAGGTTACACTTTCTGAGTCTTCCCCATCTTGCCGTGAATTAGAAGC
CTATGAATTCTAAGTCTTTCCGCGCACGTATGGACCCCACTAGGAATCTG
GCACG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATGGAATTGCAATCTTCATCAGATGGGC
TACATACAAGGTTTCTGTGGGAGAACAGAGCAGGAGCAAATCACAGCCTT
GGCTTGCAGGTGGGGCACACCAGCCTGTTCCCATGGGCTAGTACAGATAC
TCCTCCTGTTAGATCCTAAGAGAACCTGGTGATGAGTCTGTCAGGGCTCA
ACTTCTCTCTTTAAAGAAAAACAAAACAAAACAAAACGGAGAACAGCTGG
GATTAGCTCAGAAGCAGGGTGCTTGCCTCCAATATGGGAGGCCCTAGATT
TTGTTCTCAGTATTAGAATAAGAAGGAAAGAAAGGAAGAAAGAGGCCTGG
AGGGATGGCTCCAGCCGATTGCTCTTCTGAGGTCCTGAGTTCAAATCCCA
TCAACCACATGGGAAAAAAAGCTTATTTTAAGGCAGGCGTGGTGGCCGCA
CACCTTTATTCCCAGCACTCCGGAGGCTGAGGTAGGCGGATTTCTGAGTT
CAAGGCCAGCCTGGTCTACAAAGTGAGTTCCCGGACTGCCAGATCAATAC
AGAGAATCCCTGTCTTGAATAACCCCTTAGATTTTACATATTTATTGATT
AATTTTTTTGGACTACCGGCATTGTAGTTAGTCACTGAGGAACGTAAGTG
TTG

Query= MSMg01no084_g04.b1 MSMg01no084_g04.b1 CHROMAT_FILE:
MSMg01no084_g04.b1 PHD_FILE: MSMg01no084_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:24 2005
         (372 letters)



>mm_chr3_138275211_138275982
          Length = 772

 Score =  667 bits (345), Expect = 0.0
 Identities = 363/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctcctttgccatacagcttcaattctttcagtaattttccgtattggctgtg 63
           ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 541 ggaattccctcctttggtatacagcttcaattctttcagtagttttccgtattggctgtg 482

                                                                       
Query: 64  tctctaggggagatagagtagagacacgggattctacccctcttgtaagcaggaaatgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tctctaggggagatagagtagagacacgggattctacccctcttgtaagcaggaaatgct 422

                                                                       
Query: 124 agcaggcactaagtctggcctgaggctttgatgacaagcactagacttgggtggtccgga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agcaggcactaagtctggcctgaggctttgatgacaagcactagacttgggtggtccgga 362

                                                                       
Query: 184 tatcatatctccacaaagactgttccttagttcaaaaatattggtgggaaaaatattcag 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatcatatctccacaaagactgtcccttagttcaaaaatattggtgggaaaaatattcag 302

                                                                       
Query: 244 agatcaaatgtacattcaaggtgggttccctgtgcctcctagtgtgggtcccactgacac 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 301 agatcaaatgtacattcaaggtgggttccgtgtgcctcctagtgtgggtcccactgacac 242

                                                                       
Query: 304 acacagcaactcctgtgcagcttaatggaaaagaacatcacacacacacacacacacaca 363
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acacagcaactcctgtgtagcttaatggaaaagaacatcacacacacacacacacacaca 182

                    
Query: 364 cacacacac 372
           |||||||||
Sbjct: 181 cacacacac 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 19
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no084_g04.g1 MSMg01no084_g04.g1 CHROMAT_FILE:
MSMg01no084_g04.g1 PHD_FILE: MSMg01no084_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:24 2005
         (416 letters)



>mm_chr3_138165727_138166542
          Length = 816

 Score =  774 bits (400), Expect = 0.0
 Identities = 412/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatggaattgcaatcttcatcagatgggctacatacaaggtttctgtgggagaacagagc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatggaattgcaatcttcatcggatgggctacatacaaggtttctgtgggagaacagagc 260

                                                                       
Query: 61  aggagcaaatcacagccttggcttgcaggtggggcacaccagcctgttcccatgggctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagcaaatcacagccttggcttgcaggtggggcacaccagcctgttcccatgggctag 320

                                                                       
Query: 121 tacagatactcctcctgttagatcctaagagaacctggtgatgagtctgtcagggctcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacagatactcctcctgttagatcctaagagaacctggtgatgagtctgtcagggctcaa 380

                                                                       
Query: 181 cttctctctttaaagaaaaacaaaacaaaacaaaacggagaacagctgggattagctcag 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cttctctctttaaagaaaaacaaaacaaaacaaaacggagaatagctgggattagctcag 440

                                                                       
Query: 241 aagcagggtgcttgcctccaatatgggaggccctagattttgttctcagtattagaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagcagggtgcttgcctccaatatgggaggccctagattttgttctcagtattagaataa 500

                                                                       
Query: 301 gaaggaaagaaaggaagaaagaggcctggagggatggctccagccgattgctcttctgag 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaggaaagaaaggaagaaaggggcctggagggatggctccagccgattgctcttctgag 560

                                                                   
Query: 361 gtcctgagttcaaatcccatcaaccacatgggaaaaaaagcttattttaaggcagg 416
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 gtcctgagttcaaatcccatcaaccacatgggaaaaaaagtttattttaaggcagg 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)