Query= MSMg01no084_p02.b1 MSMg01no084_p02.b1 CHROMAT_FILE:
MSMg01no084_p02.b1 PHD_FILE: MSMg01no084_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:06 2005
(663 letters)
>mm_chr3_28941726_28942788
Length = 1063
Score = 1212 bits (627), Expect = 0.0
Identities = 651/659 (98%)
Strand = Plus / Minus
Query: 5 ggaattcaaaccattttccatcagtttatatcccccacaagatattttataccatttgca 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 836 ggaattcaaaccattttccatcagtttatatcccccacaagatattttataccattggca 777
Query: 65 gttaaatagcgaataatttatgtatttaagataggcaagaggcatgccaaggaatgtatg 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 776 gttaaatagcgaataatttatgtattttagataggcaagaggcatgccaaggaatgtatg 717
Query: 125 cagagatcagagaattaagttcaggaatcacatttctccttccaccatggcttccgggaa 184
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cagagatcagagaattaagtccaggaatcacatttctccttccaccatggcttccgggaa 657
Query: 185 tcaaactcagaatgtcagacttggcagcaagtgccatgacctgtggaggcatcttgccag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcaaactcagaatgtcagacttggcagcaagtgccatgacctgtggaggcatcttgccag 597
Query: 245 cctactgaataatttttaaaatgcatatcatattagactctacctagagtgtgtaaaatg 304
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cctactgaataacttttaaaatgcatatcatattagactctacctagagtgtgtaaaatg 537
Query: 305 tcagtgtaaggtggagcctgccaattgccaatatttagcctactttcccatgtaaacaga 364
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 536 tcattgtaaggtggagcctgccaattgccaatatttagcctattttcccatgtaaacaga 477
Query: 365 atgctgattcagagtccagctagaagttggttttctaagtatttatttatttatattatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atgctgattcagagtccagctagaagttggttttctaagtatttatttatttatattatt 417
Query: 425 tatatgagtcttcagacacaccagaagaggttatcggatctcataacagatagttgtgag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tatatgagtcttcagacacaccagaagaggttatcggatctcataacagatagttgtgag 357
Query: 485 ccaccacgtggatggtgggaattgaactcaggacctttaggaagagtagtcagtgcttcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ccaccacgtggatggtgggaattgaactcaggacctttaggaagagtagtcagtgcttcc 297
Query: 545 actgagccgtctctccagtcctagaagttgtttttcaagatagagtagttatctggtacc 604
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 296 actgagccatctctccagtcctagaagttggttttcaagatagagtagttatctggtacc 237
Query: 605 atgcagctcctgaaatgtaagcaggagacgccggggaccataagggaaaggttcactct 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 atgcagctcctgaaatgtaagcaggagacgccggggaccataagggaaaggttcactct 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no084_p02.g1 MSMg01no084_p02.g1 CHROMAT_FILE:
MSMg01no084_p02.g1 PHD_FILE: MSMg01no084_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:06 2005
(632 letters)
>mm_chr3_31590464_31591499
Length = 1036
Score = 1071 bits (554), Expect = 0.0
Identities = 614/638 (96%), Gaps = 10/638 (1%)
Strand = Plus / Minus
Query: 1 tcatacagctcggttcttgaactatgttctgacaaaattgaataactgtttctatttttg 60
||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 695 tcatacaactcggttcttgaactgtgttctgacaaacgtgaataactgtttctatttttg 636
Query: 61 gagcttgtatgacttaccatgaagtaaatatcctcagttt-----acattgttcaagagg 115
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 635 gagcttgtatgacttaccatgaagtaaatatcctcagtttactacacattgttcaagagg 576
Query: 116 aacaaactgattctctcagcactgccaaggggattatattccaatctataattgctgata 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aacaaactgattctctcagcactgccaaggggattatattccaatctataattgctgata 516
Query: 176 gagaaacaatatttgcagactaaatatttttcttaatcttttagtgaattgcttattcta 235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 515 gagaaacaatatttgcagactaaatatttttcttaatcttttagttaattgcttattcta 456
Query: 236 agagagtacataaaatgatatttaaatacagaaaaaaatctgtataatcaaaatcaccat 295
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 455 agagagtacataaagtgatatttaaatacag-aaaaaatctgtataatcaaaatcaccat 397
Query: 296 tacccgactgaaattaactaaccttgcgtcaatggatactttgatcatttacctcaatct 355
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 396 tacctgactgaaattaactaaccttgcatcaatggatactttgatcatttacctcaatct 337
Query: 356 accagttcccatattacaaaatttatcaatacatattttgaaaatattctaaaaagtaat 415
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 336 accagttcccatattacaaaatttatcaatatatattttgaaaatattctaaaaagtaat 277
Query: 416 gaaaatttttagggttcacattctgtaataaagattttaaagactgcttttctactctgg 475
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 276 gaaaatttttagggttcacattctgtaataaagattttaaagactgtttttctactctgg 217
Query: 476 gattgaggggtccataaggggatggaagaccaagagagcaaaataaatgaacaaaaccca 535
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 216 gattgaggggtccataaggggatggaagaccaggagagcaaaataaatgaacaaaaccca 157
Query: 536 aattta--tcatggaaactgaagcaggaacacaaggtctatgtgagtctataaggatcct 593
|| || |||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 156 aa--tacctcatggaaactgaagcaggaacacaaggtctacgtgagtctataaagatcct 99
Query: 594 ctgtacatatattaggaatgtgtaagctactgagcctc 631
||||||||||||||||||||||||||||| ||||||||
Sbjct: 98 ctgtacatatattaggaatgtgtaagctagtgagcctc 61
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1036
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1026
Effective search space: 638172
Effective search space used: 638172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
