BAC Information

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BAC

Clone NameMSMg01-084P13
Chromosome3 (Build37)
Map Location 29,560,491 - 29,560,928
singlet/doubletsinglet
Overlap gene6130401L20Rik
Upstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneLOC100040676, Evi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P13.T7 (MSMg01no084_p13.b1)MSMg01-084P13.TJ (MSMg01no084_p13.g1)
ACCAG304682AG304683
length685686
length of high quality
(start - end)
554 (43 - 596)438 (76 - 513)
definitionCHROMAT_FILE: MSMg01no084_p13.b1 PHD_FILE: MSMg01no084_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:08 2005CHROMAT_FILE: MSMg01no084_p13.g1 PHD_FILE: MSMg01no084_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCG
GAATTCTTTGTTCAGCTCGGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATGTTAGTCCC
CTATCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTTTTGGTGGTCT
TTTTGTCTTATTGATGGTGTCTTTTGCCTTGCACAAGCTCTGCAATTTTA
TGAGGTCCCATTTATTGATTCTCGATCTTACAGCACAAGCAATTGCTGTT
CTATTCAGGAATTTTTCTCCTGTACCCATATCTTCGAGGCTTTTCCCTAC
TTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCAATTCAC
AATCTTCTACATGATAACAGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTTTTTTCCAATCGATAATTTTAGCTCCCTTGTCAAAGATCAAGTGACC
ATAGGTGTGTGGGTTCATCTCTGGGTCTTCAATTCTGTTCCATTACTCTA
CTTGTCTGTCACTATACCAGTACCATGCATTTTTTATCACAGTTGCTCTG
TATTACTACTTTAGGTTGGGCTTGGTTATTCCACC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTTAGTAATGTTTGACAGCTTCA
GAGAGAGACCCCAAAGTGGGCTTCTCCTTCAAGATCTGTGTAATCAAGAG
TGTTTCCAAGTCAATATCCCCCTTGAACTCAACTAGGGAGAGAGGTGGGA
CTGTATGCCTGTGAGAAGGAAAGAGACACACATACCTCACATAGTGTCTA
TTAAATTCTGGAGTAAGCCTGGCAATGATACATGCTATGGGATGGGTGAG
ATCTATGGGGTTTTGTTACAGCTGTGAAGTCATTCCCTTGAAATGTCCTG
TCAGATGTGCAGTTGTCTATATAGCACTATCATTCCAGAATTCTACAGCC
ATGAATGGCTGTTCCTAACATAGAGCTGGCCTACGGAAAATCAAAAGGCT
CCAGTGTCTGTCGGGTTGAAACCATTCAGGCAAACAACAATGTACTTGGC
CCAAGTTTTGAAGGGTCATGCTAAGCAAAACAGTGAAAGAGTCTCAACAG
ACACTATTTTCCTTGCTCTGGGCAGCAGGGGATTTCATGGTGAAGGTGTT
GGCTTTCTGCCCCAGCTCAATTCAAGCCTCTGTGTGTTGAGATGTTAGCC
CGCCTGGCTGTCACTGCTGAGCTTTCATATTCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p13.g1 MSMg01no084_p13.g1 CHROMAT_FILE:
MSMg01no084_p13.g1 PHD_FILE: MSMg01no084_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:08 2005
         (438 letters)



>mm_chr3_29560291_29561128
          Length = 838

 Score =  832 bits (430), Expect = 0.0
 Identities = 436/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttagtaatgtttgacagcttcagagagagaccccaaagtgggcttctccttcaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 catttagtaatgtttgacagcttcagagagagaccccaaagtgggcttctccttcaagat 579

                                                                       
Query: 61  ctgtgtaatcaagagtgtttccaagtcaatatcccccttgaactcaactagggagagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ctgtgtaatcaagagtgtttccaagtcaatatcccccttgaactcaactagggagagagg 519

                                                                       
Query: 121 tgggactgtatgcctgtgagaaggaaagagacacacatacctcacatagtgtctattaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tgggactgtatgcctgtgagaaggaaagagacacacatacctcacatagtgtctattaaa 459

                                                                       
Query: 181 ttctggagtaagcctggcaatgatacatgctatgggatgggtgagatctatggggttttg 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 458 ttctggagtaagcctggcaatgatatatgctatgggatgggtgagatctatggggttttg 399

                                                                       
Query: 241 ttacagctgtgaagtcattcccttgaaatgtcctgtcagatgtgcagttgtctatatagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttacagctgtgaagtcattcccttgaaatgtcctgtcagatgtgcagttgtctatatagc 339

                                                                       
Query: 301 actatcattccagaattctacagccatgaatggctgttcctaacatagagctggcctacg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 actatcattccagaattctacagccatgaatggctgttcctaacatagagctggcctacg 279

                                                                       
Query: 361 gaaaatcaaaaggctccagtgtctgtcgggttgaaaccattcaggcaaacaacaatgtac 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 278 gaaaatcaaaaggctccagtgtctgtcgggttgaaaccattcagccaaacaacaatgtac 219

                             
Query: 421 ttggcccaagttttgaag 438
           ||||||||||||||||||
Sbjct: 218 ttggcccaagttttgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)