BAC Information

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BAC

Clone NameMSMg01-085A05
Chromosome3 (Build37)
Map Location 114,496,067 - 114,496,581
singlet/doubletsinglet
Overlap genenone
Upstream geneCol11a1, LOC100043220
Downstream geneOlfm3, EG546808, Edg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085A05.T7 (MSMg01no085_a05.b1)MSMg01-085A05.TJ (MSMg01no085_a05.g1)
ACCAG304714AG304715
length1,2602,414
length of high quality
(start - end)
604 (31 - 634)---
definitionCHROMAT_FILE: MSMg01no085_a05.b1 PHD_FILE: MSMg01no085_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:12 2005CHROMAT_FILE: MSMg01no085_a05.g1 PHD_FILE: MSMg01no085_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGGNNNGGACATTGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAAT
TCTGCAGTGATACTAAAACTTGGGGACAGAAAGCAAAATATTAGATATGA
AGCACCTATCACATACTGAACAATTAAATAGTTTTCATAGCTTTAGAAGC
ACGATACTAAAATGATAGCTTTGTCTAGTTAAATATAAACAACCCAATTA
AACTGCAAGACATTCATCTTGAATAAAGCTAAGAGAACTACAAAAATATG
AAGGCACATTGGACAAAATGAGTAGACCTTACTTTCAGCATTAACATAGA
GTACCCAATGATGTCCTTTGCTTCCAAGGCTAAGAGTCAGTGCTTGATGA
TGATGATAATGATGATGACGACGACGATGGTGATGAAATTCTTTTATTTA
TTTTATTTCCAAAAGTTCCCCCCTTCACAGCCCTCCTCTCCATAGTCATC
ACCCCATCTCCCTTTTACCCAGCCTCTGAGAGGGTGCTTTTCTTCTCCCA
CCCACCCTCAACTCAATCCTACCAGCGTCCCTCATCCCTGGGGCAGCAAG
TTTTCACAGAATTAAGTTTATCCTCTCCCACTGAGGTCATTCTTGAGAAT
TCTTCTCATTGTATAATTTTTATCATGCTATGGGAGTAGAACTCGGTGTC
GTTCAGATGCAAGGACTATCTATCCATAAGAAGTATAATATTTGCTACAT
CTCTATGCTCTGTGAAGCTGTTGCAAGCTATAGCCAACCATTAAAGACTC
TGGGTGCTAATATTGCTGCAGGCCATTCATTCTAGTACCTACGAATATTG
CTTGTGTACCATATACCTCCTAAGTATAATCCATTAGGGAAAATCTCTTT
TCTTCTGTTCTATATTATCTTCCCTTCTACTTGTTACTTCGACCATGGAA
TTTTTCCCTTCTCTAATTCTAATTTTCTTTGTGTTACGTAATTTTATTTT
TTTTTTGCTTTCTGTCATTATGTTTTTTTTTTTCTTTTAATCCTATTGCC
TTTACTCTTTACTCTTTTTCTTTTATGTTCTCTTATTTTGTTATATTTTC
TTTCTAATATGTTTCTCCCTTTTCCTTGTGTTTTTCCTTCTATATAATTT
TCTTAATATTTTTCTTTATTATTTTTTTTTTTTTCTTTTTTGTACTTATC
TTTTTTATTTATATTCTTTTCCTTACTTTGTTTTTTATTTCTTCTCTTTA
CTTTCATATCTTTTCTTTCCTCTTAGTTCCCTCTTCTTCTTTTATTTGTA
TCCTTCTTTA
ATAGGAATAATATATTTTGAGGAGAAAGGGAAGGAGAGGGGGGGGATGTA
TGAGGGTAGTATTTAATATATTATGTAGGATGAGATAATAGGAAGGGGGA
GGTAGAGGGGGGCCCCTCTTAGAGAGGGGGAGGGGTGTGGATGATATTGT
GTCTGATAGGTGATGTGGATGGAGTAAAACTCTTATAAAAGGAGAGAGAG
GGGTAAGTGAGGAGTTGGGTGGAGTAGGTTGGGAGGATAATGATGGGTGT
AAAGGTGATGTAATATGTGATGGTGAGAGAGATGTGTGTAGTGATTAGTT
CTTTTAAAAAAGAGAATGAGTGTGATGTTGGTGATAAAAAGTAGTGATGG
AATTGGTTGAGAGGAAAAGGTGAGGAGGAGGAGGAAAAGGAGAGGATGTG
TAGTAGTGTGTGTGTGATATACTGGTGATGAGTAGTGAAAGATGTGATAT
GAGGGACAGATCAGGTATAGCTAAATATGTGTGGATGGTTATGGGTGAAG
TGTATGATGAGGTGAAGGATAAGTGGAAGTTAGAGGTGTGGTTGTTGAGA
TGGTGTTATGCTGCATTAGATAACTATAAGAATTATAGGGTATGTGGATC
ATGGGGTGCGGTAATGTGGTGGTTAGTAGGATGATAGTGATTATGTACAG
TGTGAGAGANTGAGTAAATGAAGAGGGAACTGAAATATGTATGTTTTCTT
TATTTTGTTGTCAGAATGATAGAGTGGTAGAACGTATTAAGTGAGTAAAG
TAGAGGATGCGAGAGGAAGAGGTAGAATACAGAGAGAAAGCGAAATTTAT
TTTTTTTTATTGTTTGTTCACGCCCGCGCGCCCACGCAGCGTGAGCTGGG
AGGACGCGGTTTTCTTGTGTTTTTAAATAAAAAAAGGAAAGAGAANAGAT
ACTNGGTGGGTTTTNTCTCTTGTTTCTTNTCTTTCTTTGACGATCATGTA
GTTGTGATGAGGAGTGGGTATCGCAAGGTTAGAGAGGTGTGATGTCTGTG
TTAGGTGTGGNTGGGAGGCGTGCGGGTGGAGGTATATGTAGGGAATAGTG
TATAGTAGAGATCAGAGGGATGATCGCGGAATGAGAGAAATGGAGGAGGG
AGAGAGACGAGAGAGTGGCGGGGTGTGTGATGAGGCTGGTTGGGTATAGT
GTCTTTGTAGTAGATTGTAATGAGTGATTATGATATATGCGAAGTATTGA
AATATAGGAGTAGAGCGATGGATAGGAGGGTATGTTAGGCATCATGAATT
ATGTAAGTAGGTAGGGTATAGTGGGTCTTGTGAGGAGCTGAGTTGTAGTG
CTTGAGAGATGAGTGTGAGCACGTGTGATATCGAATGCCGCGTGGCGTGT
GAAGAAAGTAGATGTGAAGGGACAGAAGAGTAGATGATCATACAGTGTGT
GCATGAAGAAATGTGGTGGATGGTGTGAGTGGAGTGGGATAGAAGAGAGT
AAGAGAGAGTTGTCNCCCTTGTGTGTAGGAGTGAATGTGGAGCCGAGATG
TGAGATAGTTAAAGTGGAGACAGATATAAGAGTAGGAGGAGAATAGGTAG
GATTGAGTGGTAAAGGATGGTAAGAATGANTGTACTGTGGCTGAGGTAGG
GTGTGATGGTTCAGAGTATAGTGAGGTATAGTGTGAGAGGTTAGGTGTCG
GGTGTGTGAGAGATGTGGTCGGTGAAGAGCGATATGATGAGTGACTGACT
GTGTGTGAGAGTCTTAGCGGAGAGAGAGTAGTGTNGTAGATGATAGTGTG
TANTATTGTAAATTGTATGAGTAGTAGAGATGATGATGTGTAGAGTCGAG
GTTGTGTAGAGGAGATGNTACTGAATGTATACAGATGTGGTGGAATATGT
GGAAGTGTAGATGTTGACTGGTGTGTAGGTGTGTGGTGTAAGTGAGGAGT
GTAAGTGAGACNGGGTGAATGGACATAGTGAGATGTAGGTTATAATTGTG
ATGATAAGGTGTGATTGGAGTCCATAGGATGCGAGGGAGTGGTGAGGATG
TGGAGTGAGGTAGTATAGATGATATAGATATGTAGATATGTTAGTGTTAG
TGNGAGCGTTAGNGTAGTATTAGTGGTGAGTAANATGAGTAGTATNTAGT
GTATTTGAGGTGCGAGAANGTATATNTATAGTGTGTGGTATGATGNAGTG
AGGTATAGATGAGAGATGGAGAGNTGACGTATGGATATGTGTGTATATAG
TGGATGNAGTGTTGTGTATGTAGTAGTGAGTGAAGATGGTATAGGAAGAT
AATGTGGATGTATGTGAGTGCGGTGANTAGTGGTAGTGCANATAGTGGAG
ATCGTATGTGTTAGATTGGATGTGAGGAGAAGAGAGTGAGAGTGAAGTGT
GATAGGAAGTGGTGATGACGATGCAGTNANGAAGACAGAGCATGTGGTAT
GAGAAGTGTGTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_a05.b1 MSMg01no085_a05.b1 CHROMAT_FILE:
MSMg01no085_a05.b1 PHD_FILE: MSMg01no085_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:12 2005
         (604 letters)



>mm_chr3_114496067_114497071
          Length = 1005

 Score =  965 bits (499), Expect = 0.0
 Identities = 511/515 (99%), Gaps = 1/515 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattc-tgcagtgatactaaaacttggggacagaaagcaaaatattagatatgaagca 74
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 515 ggaattcatgcagtgatactaaaatttggggacagaaagcaaaatattagatatgaagca 456

                                                                       
Query: 75  cctatcacatactgaacaattaaatagttttcatagctttagaagcacgatactaaaatg 134
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cctattacatactgaacaattaaatagttttcatagctttagaagcacgatactaaaatg 396

                                                                       
Query: 135 atagctttgtctagttaaatataaacaacccaattaaactgcaagacattcatcttgaat 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atagctttgtctagttaaatataaacaacccaattaaactgcaagacattcatcttgaat 336

                                                                       
Query: 195 aaagctaagagaactacaaaaatatgaaggcacattggacaaaatgagtagaccttactt 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaagctaagagaactacaaaaatatgaaggcacattggacaaaatgagtagaccttactt 276

                                                                       
Query: 255 tcagcattaacatagagtacccaatgatgtcctttgcttccaaggctaagagtcagtgct 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tcagcattaacatagagtacccaatgatgtcctttgcttccaaggctaagagtcagtgct 216

                                                                       
Query: 315 tgatgatgatgataatgatgatgacgacgacgatggtgatgaaattcttttatttatttt 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 215 tgatgatgatgataatgatgatgacgacgacgatggtgatgaaattcttttatttattta 156

                                                                       
Query: 375 atttccaaaagttccccccttcacagccctcctctccatagtcatcaccccatctccctt 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 atttccaaaagttccccccttcacagccctcctctccatagtcatcaccccatctccctt 96

                                                                       
Query: 435 ttacccagcctctgagagggtgcttttcttctcccacccaccctcaactcaatcctacca 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  ttacccagcctctgagagggtgcttttcttctcccacccaccctcaactcaatcctacca 36

                                              
Query: 495 gcgtccctcatccctggggcagcaagttttcacag 529
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  gcgtccctcatccctggggcagcaagttttcacag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space:   591030
Effective search space used:   591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)