BAC Information

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BAC

Clone NameMSMg01-085E14
Chromosome3 (Build37)
Map Location 151,771,176 - 151,771,372
singlet/doubletsinglet
Overlap geneGipc2
Upstream geneEltd1, Ifi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548
Downstream geneDnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085E14.T7 (MSMg01no085_e14.b1)MSMg01-085E14.TJ (MSMg01no085_e14.g1)
ACCAG304917AG304918
length1,0571,283
length of high quality
(start - end)
200 (10 - 209)276 (129 - 404)
definitionCHROMAT_FILE: MSMg01no085_e14.b1 PHD_FILE: MSMg01no085_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:52 2005CHROMAT_FILE: MSMg01no085_e14.g1 PHD_FILE: MSMg01no085_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCATCAGCCCTCTCTCTTCCCCAGCTTCCTTCAGACAGAGAGGAAGCC
CCAAGGGACTTCCTGGCTGCCTTCTGGGCCACTCACACCTCTTTGCTCTG
AAAATAAAACCAACTCCTTTTGTTCCGTTTGTAAAGCTTCCAGCCCCTCT
CACCTGGATGCTTTCTTCTGGTACATCCAACAGCCCTCAGACATATGGCA
ATAATGGAAGCCAGATGGGCTGCGTGTGTTTTTGGTAACTCTGAAAGGAG
GCACACCCCTTATCAAATCTGCCATAATTGTGTATTGTTTTCTAGAGGAA
ATTACCAGTTTCTCACAGCCCCTGTTGTGAGACTTTCTGAGCTCACGCCT
TTCCTACTCATGTGTTTTTACAGAAATAGGACCAAGGTCGAAAGCCGTAA
AGACATCAACAGAAAAAATTGGTACTTCAAGACGTACCCTCCGTCTGATA
TCGAAAGGCCCCGCTACACTATAAGAGCTGTTATTGTTATCCCATTCTGT
CTCGAAATGTACAGGTCTGCGTATTTATCATAGCTGGTGTAAAACCTAAC
ATATTCATAGCGTGTATTATGTACTCTCTTTTTCTTCTTATATTTTGCAT
TCTCTTTCCGTCTCATGCTCATCTTGAATACCACTGTGTTAGCTCTAACA
TTAATTTACCTTATATCTTCCTTATCATTGTCTGTGTTTTTTTTACTCTC
CCTCTTTGTTTATTATCTTTATTTTCTTGTCTCTTATATTTTGGTTTTCT
CAATTTAATATATTCACTCTTTATTAATTCTTATTTTATTTCTCATTTCT
ATATGTTTTATTTCACTATTATTTTTTGTCTTTTTATTATTCAATTTTTT
TCTTATTTTTATTTTTATTCTTTTTTTTCTTTCTTAATAATTACTTTTTT
TTCCAATTTACCTTTGTTTTTCTTCTTTATAATTATAATCATTATATTTT
TTTTTTTATTTTTATTTCTCTTACTATTCTTATCAATATTTTCTCTCTAT
ATTTTCCTTTCTTTTTATCTATTTTATTTTTTTTTTTTTATAATTTATTT
TTTTTTC
NTTTTGTATGACTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTTTAAAGGCTCAGGCTCTAAGATCAAGAG
TTGATAAATGCCTATCTCATGACCCTGCGGAAGATTCTATAAAGCAAAGG
ACATAGTCAATAAAACAAATCAGCAACCTACAGTTTGGGAAAAAAGCCTT
CATTAACCCCACATCTAATAGAGAGCTAATATTCAAAATATTTAAAGGAT
TCAAGAAGCTAACCACCAAAAAAACAAACAACCCAATCAAAAAATGCAGT
ACAGAACTAAACTGAGAATTCACAACTGAGGAATCTCAAATGGCTGCGAG
GCACCCAAAGAAATGTTCTTAGCGATCAGAGAAATGCAACTCAAAGGCAC
CCTTAGATTCCACCTTACACCAATCAGAATGGCTAAGATCAAAACCTCAG
GTGACAACACACGATGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCAT
CGCTGGTGGGATTGCAAACTGGTGCAACCTCTCTAGAAATCAATCTGAAG
TTTCCTCAGAAAACAGATCAACCTGAAGACCCAGCAATACCACTCTTTGG
ACATATACCCAAAAGATGCTCCACCATGCCACAGGTACACATGTTCCACT
TTGTTCATAGCAACCTTATCTGTGATCACCAAAAGTTCGAGGTAACCCAG
ATGTCCCATGACTGCCATATAGTATACCGAGAATCGTGCTTCATTTACAC
ACTTTACTCTACTACCTATAATGAGGATATCCTTAGTTTTGCCTGCTAAT
GCTCGTTACTTAAAAATACCTTCTTGTGTGACTTATTCTAACCCTTAAGG
ACTTGCTTGGTTATTACCTCCCTCATTAGTGTATTTTATTCCATTATATA
TTTTCCTTTTTTATATCCCCTTAATCCTCCCCCACTTAACTCCATAAAGG
TTCCACATTCTTTAATTGGTCCTTTTGTATAAGTTTTCATTTCCCTTTGG
TGTAGTTATAACAATTTATCTATTTATACTCAAAACTATCCCTGGTTTCG
TCCTCTTTCTTCTCCTTTTATTTACTTTTGTATTTCTTATTATCTCTTCT
CCCACCTCTTATCTGTTTTATTTTTCTATCTTATTCCTCATTTTTTCATT
TTCTTTTTATTTATATATCTTTTACTCCTACCTTCTCATCCATAATCTCN
TCTTGCTTATCCANATCTTACTTACTTCTATCGTATATACCACATTCTCT
TTAATGTCATTTTATTATCATTTCCTTCTACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_e14.b1 MSMg01no085_e14.b1 CHROMAT_FILE:
MSMg01no085_e14.b1 PHD_FILE: MSMg01no085_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:52 2005
         (200 letters)



>mm_chr3_151770973_151771572
          Length = 600

 Score =  335 bits (173), Expect = 1e-96
 Identities = 191/197 (96%)
 Strand = Plus / Minus

                                                                       
Query: 4   tctctcttccccagcttccttcagacagagaggaagccccaagggacttcctggctgcct 63
           |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
Sbjct: 400 tctctcttccccagcttccttcagacagagaggaagtcccatgggacttcctggctgctt 341

                                                                       
Query: 64  tctgggccactcacacctctttgctctgaaaataaaaccaactccttttgttccgtttgt 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tctgggccactcacacttctttgctctgaaaataaaaccaactccttttgttccgtttgt 281

                                                                       
Query: 124 aaagcttccagcccctctcacctggatgctttcttctggtacatccaacagccctcagac 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 aaagcttccagaccctctcacctggatgctttcttctggtacatccaacagccctcagac 221

                            
Query: 184 atatggcaataatggaa 200
           |||||| ||||||||||
Sbjct: 220 atatgggaataatggaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)