BAC Information

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BAC

Clone NameMSMg01-085O11
Chromosome3 (Build37)
Map Location 76,316,558 - 76,317,121
singlet/doubletsinglet
Overlap geneFstl5
Upstream genePdcd10, Serpini1, Golph4
Downstream geneLOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085O11.T7 (MSMg01no085_o11.b1)MSMg01-085O11.TJ (MSMg01no085_o11.g1)
ACCAG305355AG305356
length1,2811,487
length of high quality
(start - end)
564 (115 - 678)---
definitionCHROMAT_FILE: MSMg01no085_o11.b1 PHD_FILE: MSMg01no085_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:19 2005CHROMAT_FILE: MSMg01no085_o11.g1 PHD_FILE: MSMg01no085_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGTTACTATGGGCGCTAAGACTACTAAGGGAGAGGATCCGCGGAATTCTG
AGTAATAGTTCAACTCATTAGTTTGACCCCAAACTCTTCTCCAATCTGTG
TGATTTCTAGGACTTCTCTGACCTTCTGACCAAATGACACTGCTTGGCCT
CAAATTAACTCTTGCAACTTCTTCTAATCCTCTGGGTCCTTCTTTTTTGG
CTTCAACTACCACTGCTGCATGAAATGAATGGAACTGAACTCAACTCCAC
TGCATTGCCTCCTGTGATCGCTCACTGAACAGAAGTGCCTGACCCTCTCT
TCTCCTGCACTGCTCTTAAATAGTCTCCCTTTCCTTTCTGTTCTTGTGAG
AGGTGGGCATATCCTATCTCTGATTCATTCTGTCAAAATCTTTCTCTGAT
TCATTACTTTGTATGCCTCTCGATTACATTTCTCTGTCAAATATGGCTGT
TTCTATCTATAAACAAACCTTACCTAATTTTTTTGGCATTAAAGATGTTT
ACTAAACATGTGTCACTATTGCAGCAAGAGTAACAATGTTGCTGAACTAA
AATCCTTCTATAATCTTTGTGAAAATAATTTATTTAAGGTATGATTTCTA
TTTTTCTCTAAGTAAATAATCTCTTAAGTTGTGAGAACCATTATTCTAAG
TATCTTAAATATTTTTAATATAATGAGTTTTCAACCCTACAATTTCTACA
TGTCTTTTTCCATTTGAATTATCTCTTTATGCCCCTATTTTTCCAAATAT
CCAACTTTTACTTATAAAATAAGTACACCAGCTTAACCCCGCTGTTTTTA
CTGATATTGATTTTTGATTCTTGTCTTTTACCTGAATTTGGTCACATTTC
CCTTCTTTGTGCATCTAACTGATTTTTAACTTGCTCATTACTCTAACAAC
CCCTATTAATTTTTAAAATATTTATATATTTTAATTTTTTTTCTGAAAAT
ATAGGTTCTTTTTTTTTATCTATACTTCTATAATTTAACTAATAATATCG
TTCTATCATACTTATTTTATGTTCTTTTTCTTTTAATAATTAATACTAAT
TTCCCTATTTTTTTACCCCTAATAATTTGTACACTATCTATAATACTATT
TATTATACTTAATTTTAATTCTCTATTACTTTAATTCTCCTCTAGTTCTT
TGTATATTTCTTTTTCATCTTTTTATAAAATTTATATATTATCTTTTCTA
TTTNATTTCCTAATATATCTCTTACTATACTTCTAATCACTTATACACAT
ATATGTATATATTATATAATCCTATTCTATG
TTAAGCTAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCTTTATAGCACTTTTTCTAGTATTTAGGAGACAACTA
TTTTCTTTAAATGCTTACCCCCTTTTGCCATAGTATTCTCATCAAGAGAT
AGAAGACATGGATATAGGCAGGAAAGATCACACATTTGAATATGAGAAAA
AGCTAGTTTCAATTTAGAGCTCACAGCGGACTAACCCAGAAAAGATGTCT
TTTGTAATATTTTCTTTACTCCTTACCGTTCACACCAAACTTTCCACATT
CTGTCTTTGCATTATGTTTACCTTATAACCATTTTCTTTTTTTTCATATT
CCTCTTCTATCTTTCTTTTTTTCTTTTTTTCTTTTTTCTTTTCACATTTT
TTTTTTTTTTTCTTATATTTTCCTTTCTTTTTTTTTTCCTCTTTTTATTT
TTCTCTCCTTTCCCTTTTTTCTTTTTTCTTACATCTTTTTCCTACCTTTT
TTTTAAAAATAACCTCTCTTTTTTTTACTTACTTTCTTTTCTCTATTTTT
ATCTTTTTCCTTTTTTTTATTTTTTTTTTCTTTTTCTCTTTTTTATTTTT
CTTTTATTTTCTCTTTTTTCCTTTCTATTTTTTATTTTCTTATTACTTTT
TTTTTCTTTTTTTTTCTATTCCTTCCTACCCTTTCTATTTTTTTTCTTTA
TCCTACTACTCATTTTCATCTTTATTCCTTTCACTTCTCCTCTTTCTTTA
TTCTTATTTTATCATCTCATTTCCCCTCTTTTTTTCCCCTCCTTCTTCTT
TTTTTCTCCTACTCTTTTCTTAATCTTCTAATTTCTCTACATTTTTATTC
TCCCCTTCTCTTTTATTATCCATATAAATAACTGATTTTTATATATATAA
TTTTTATTATATTAATTACTTAAATACTTTAATTTTTTTTTTGCCATCTT
TACAATCTTTTATCATTCCTTCCTCTATTCCTTCTTTTTCTTATCTTCTT
ACATCCTTCTTCTCTTCTTTCTCTCTCGCTATTCCTTTTCTCTTTCATTT
TATCCTTTTCTCTTCTTTCTTTCATATCTACTTTCGTCTTCCTTCTTTTC
AACTTCTCATATTTCTTCTCCTTCTTTATTTTATCCACTATCTCTTCTTT
CTCTATCTTCTTCATTATTTTACTATNACCCTTCTATCTCTTATTTTGTT
CTTCTTTCGCCTTTCATATACTATTTCTCTCTTTCTTCTGTGTATTTTAA
TTTTTATTCTATTCTTCATTCCTAATTATCTTTTTCTATCTTGTTATGCT
GTCTATATTCTTTCTTTCTTATCTCTTCTTCCCTCCTTCTTATTCTATAT
TATGTCTTCTTATTTATTATCCTCCTCTTCTCTCTTCATTTCTTCACACT
CTCCAACTCCTTATTTGCTCATTTACTCTTNTCCTTTCTTTCTTTCCCAT
TCGCTATCGTTTCTGATTACTTACTTCATCTCCACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_o11.b1 MSMg01no085_o11.b1 CHROMAT_FILE:
MSMg01no085_o11.b1 PHD_FILE: MSMg01no085_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:19 2005
         (564 letters)



>mm_chr3_76316358_76317321
          Length = 964

 Score = 1044 bits (540), Expect = 0.0
 Identities = 558/564 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgaccttctgaccaaatgacactgcttggcctcaaattaactcttgcaacttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgaccttctgaccaaatgacactgcttggcctcaaattaactcttgcaacttcttc 260

                                                                       
Query: 61  taatcctctgggtccttcttttttggcttcaactaccactgctgcatgaaatgaatggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatcctctgggtccttcttttttggcttcaactaccactgctgcatgaaatgaatggaa 320

                                                                       
Query: 121 ctgaactcaactccactgcattgcctcctgtgatcgctcactgaacagaagtgcctgacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaactcaactccactgcattgcctcctgtgatcgctcactgaacagaagtgcctgacc 380

                                                                       
Query: 181 ctctcttctcctgcactgctcttaaatagtctccctttcctttctgttcttgtgagaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcttctcctgcactgctcttaaatagtctccctttcctttctgttcttgtgagaggt 440

                                                                       
Query: 241 gggcatatcctatctctgattcattctgtcaaaatctttctctgattcattactttgtat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcatatcctatctctgattcattctgtcaaaatctttctctgattcattactttgtat 500

                                                                       
Query: 301 gcctctcgattacatttctctgtcaaatatggctgtttctatctataaacaaaccttacc 360
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctcttgattagatttctctgtcaaatatggctgtttctatctataaacaaaccttacc 560

                                                                       
Query: 361 taatttttttggcattaaagatgtttactaaacatgtgtcactattgcagcaagagtaac 420
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 taatttttttggtattaaagatgtttactaaacatgtgtcaatattgcagcaagagtaac 620

                                                                       
Query: 421 aatgttgctgaactaaaatccttctataatctttgtgaaaataatttatttaaggtatga 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgttgctgaactaaaattcttctataatctttgtgaaaataatttatttaaggtatga 680

                                                                       
Query: 481 tttctatttttctctaagtaaataatctcttaagttgtgagaaccattattctaagtatc 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tttctatttttctctaagtaaataatctcttaagttgtgagaaacattattctaagtatc 740

                                   
Query: 541 ttaaatatttttaatataatgagt 564
           ||||||||||||||||||||||||
Sbjct: 741 ttaaatatttttaatataatgagt 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)