BAC Information

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BAC

Clone NameMSMg01-086B02
Chromosome3 (Build37)
Map Location 135,577,665 - 135,578,093
singlet/doubletsinglet
Overlap genenone
Upstream geneTacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8
Downstream geneLOC100039350, LOC383923, Bank1, LOC100039477, LOC668868, Ppp3ca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086B02.T7 (MSMg01no086_b02.b1)MSMg01-086B02.TJ (MSMg01no086_b02.g1)
ACCAG305478AG305479
length774748
length of high quality
(start - end)
433 (111 - 543)391 (142 - 532)
definitionCHROMAT_FILE: MSMg01no086_b02.b1 PHD_FILE: MSMg01no086_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:39 2005CHROMAT_FILE: MSMg01no086_b02.g1 PHD_FILE: MSMg01no086_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTAATATTTTTTTTTTTTTATATATTTATTTTTTATTTAATCTTAATCT
ATGATAAATNNNNAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAGTTCAGTTACCTGACACAAGAGAGTGGGT
GGTTTTTTTCAAGTTAATGTTATACATTTTGGTGAAAAAGTAGTTTTTCC
TCTTAGGCTTGTTAAAATGTTTCTTGCTTCCAGTGTCCTGATATTTCTTC
ACTTTTTAAATATTTTCATAAAACTCATTATTCCTAGATACAGTCAGTGT
TGTTTAGAACAATTCACTATAGAATTTGGTGTGCTGTGATGGCATTGTAG
TGAGGCAGTTGTATTTTTAGAACGACTTTCTCAGAGTTAAGGAATTAGAA
ATGCAGCAGGGAGAAAAAAGTTTACAGGATTTTGAGAGAGAAAAGAATCA
TGGGTGAATGTCTCCATTTTTTTGAGCTGTGAGACCCACAGCATTTACAT
CTCCATCTCTTTAAGAGTGCCTCTTGAGGCAGGTGGAAAGGACCAGGAGA
GTGCAACAATGCTATCACCAGTGGGAAAGCAGTAAAATTCTCCACTTTCC
TTTATCAGCCCTTAAGGTTCCCTTAAGTTTCCTAACAAGTGATGTTGTGA
ACTGTGCGCGAGGACAAAGAAGTTATTTTTTAGCCTCAGTATAAGGTTGG
CTTGCCTAGGAAAATTGCAAATTCTTTAACCTTTTTTCTCCTTTTCCCTT
TTCACGGCAAATGTATTATATATT
CCCTCCCTTTCCTTTTTCTTTCTCCCCGCTTCTCCCCCCCTTTCCCTTTC
TCTCCTCTTCNNNTCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATCTTCCA
ACTGAGATTTGTAGCAGTCTCATGTAGGAGGGAACATGCAGATATTTTTT
CATGCTGTGTCTTAGTTTATTTAACATGATGACTTCCATTTGTGCTTGGG
AGCCTGCTTTTATATGAATTTTAGTGTTTTCTTCTAGTTCTGGGAGGGAT
GTCTTTGGTAGTTTGATGGTGATGCTATTGACCCTGAAGATTGCTCTGAT
TGTATGGATATTCTACCTTCCAATCCTCAAACATATTTCTATGCTATAAT
GTCCTCTCTGTAATTTATATTGGAAGTTTTGTAATTTTCATTTGCATGGG
TCTCATAGCTCTGTAAGTGTATCCTAGTTATCCTCCCTACCCCCACTTTG
TAGCTCTTGTGGTATATAATTTGTCTCCTGAAGCAGCTGTGCTCGAGAGT
CATCGGTGCTCTGCTGAGCCATTTTGGGTCTATGAGGCTTTGCTATTATG
GTAAGAATATCTGGTGTTAGGGACCAGATATTGTGATCTGCCCAGGTCCT
TGACCCCCTGGGGTAAGTATCATTGACACAATAGCTGCCTTTCCCTGATA
ATTGGATGGTCCTCTTGGGGGTTCATGGCGAGATTAGAACCCCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_b02.b1 MSMg01no086_b02.b1 CHROMAT_FILE:
MSMg01no086_b02.b1 PHD_FILE: MSMg01no086_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:39 2005
         (433 letters)



>mm_chr3_135577461_135578293
          Length = 833

 Score =  814 bits (421), Expect = 0.0
 Identities = 427/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttcagttacctgacacaagagagtgggtggtttttttcaagttaatgttata 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttcagttaactgacacaagagagtgggtggtttttttcaagttaatgttata 264

                                                                       
Query: 65  cattttggtgaaaaagtagtttttcctcttaggcttgttaaaatgtttcttgcttccagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cattttggtgaaaaagtagtttttcctcttaggcttgttaaaatgtttcttgcttccagt 324

                                                                       
Query: 125 gtcctgatatttcttcactttttaaatattttcataaaactcattattcctagatacagt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcctgatatttcttcactttttaaatattttcataaaactcattattcctagatacagt 384

                                                                       
Query: 185 cagtgttgtttagaacaattcactatagaatttggtgtgctgtgatggcattgtagtgag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtgttgtttagaacaattcactatagaatttggtgtgctgtgatggcattgtagtgag 444

                                                                       
Query: 245 gcagttgtatttttagaacgactttctcagagttaaggaattagaaatgcagcagggaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagttgtatttttagaacgactttctcagagttaaggaattagaaatgcagcagggaga 504

                                                                       
Query: 305 aaaaagtttacaggattttgagagagaaaagaatcatgggtgaatgtctccatttttttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaaagtttacaggattttgagagagaaaagaatcatgggtgaatgtctccatttttttg 564

                                                                       
Query: 365 agctgtgagacccacagcatttacatctccatctctttaagagtgcctcttgaggcaggt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 agctgtgagacccacagcatttacatctccatctctttaagagtgcctcttgaggcatgt 624

                    
Query: 425 ggaaaggac 433
           |||||||||
Sbjct: 625 ggaaaggac 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)