BAC Information

Click to search

BAC

Clone NameMSMg01-086J01
Chromosome3 (Build37)
Map Location 126,168,571 - 126,168,862
singlet/doubletsinglet
Overlap genenone
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneCamk2d, Ank2, LOC100043749
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086J01.T7 (MSMg01no086_j01.b1)MSMg01-086J01.TJ (MSMg01no086_j01.g1)
ACCAG305840AG305841
length680679
length of high quality
(start - end)
555 (31 - 585)297 (55 - 351)
definitionCHROMAT_FILE: MSMg01no086_j01.b1 PHD_FILE: MSMg01no086_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:21 2005CHROMAT_FILE: MSMg01no086_j01.g1 PHD_FILE: MSMg01no086_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCTTTGTT
TATCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCAC
CTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTAATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGCAATTTTATTAGGTCCCATTT
GTCTATTCTCCATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATT
TTTCCCCTGTGCCCATATCTTCGAGGCGTTTCCCCACTTTCTCCTATATA
AGTTTCAGTGTCTCTGGTTTTATGTGGAGTCCTTAATCAACTTAGATTTG
ACCTTAGTACAAGGAGATAGGAATGGATCAATTCGAATTCTTCTGCATGG
TAACCTCCAGTTCTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTGTCC
ACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGT
GGGTTCATTTCTGGGTCTTCAGTTCTATTCCATTGGTCTACTGGTCTGCC
GCTATACCAGTACCATGCAGTTTTTATCATAATTGCTCTGTAGTACAGCT
TTAGGCCCGGCATGTTGATTCCATCTCACG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCCCGAGAAAACCAAAATAATACACAGAGAGGGAAATATAGGTGAG
CCTGAACACAACACTAAAAATACGCAGAAATATCTTTTTAATAAAAGAGA
ACTCACCCTAGAGAAAAAAATGTTAATTTAAAAGTATGGGAAAATCAACA
AAGTGGAAATAAACACGTGCATGATAAGAAGCTATAGCTCTGAAAGGAAA
AATGTTACAAATAAGATTATAAAGGCCTGCAGCAGTTTTCAAATGTTTGA
ACAATGTTAAATCATTTTTATTAAAATACAAGGATAGTATTTAAGTTAAC
AAAAACTATGCTAGACATTTATTTATTTATTTGATAAAATAAAAATAAAC
CATTGAAATGAGAGGAAATCATTAAGAATAAACCTTCTATGAGTTAGTAA
TAAGTTTAAGACCACTTTGAGGCGATCAAGCCTAGGAGTAGCTTTTGGAG
CAGGCAGAATAGCCTGATCTCACTCTGGCCACTTAGGCAGAGGGAGTCAC
TTTGAAGGAAGGTTTGGGAAAGAAAGTGACTTCAAGGTGTGAAAAACATT
TATGCAGGTATAATCTTTTTTTTTTCCCACATAGTTTTCAGAAAAAAAAA
AAACCATCGAAAGCCCTTTTTGAAACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_j01.g1 MSMg01no086_j01.g1 CHROMAT_FILE:
MSMg01no086_j01.g1 PHD_FILE: MSMg01no086_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:21 2005
         (297 letters)



>mm_chr3_126168366_126169062
          Length = 697

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   agaaaaccaaaataatacacagagagggaaatataggtgagcctgaacacaacactaaaa 65
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 497 agaaaaccaaaataatacacagagagggaaatgtaggtgagcctgaacacaacactaaaa 438

                                                                       
Query: 66  atacgcagaaatatctttttaataaaagagaactcaccctagagaaaaaaatgttaattt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atacgcagaaatatctttttaataaaagagaactcaccctagagaaaaaaatgttaattt 378

                                                                       
Query: 126 aaaagtatgggaaaatcaacaaagtggaaataaacacgtgcatgataagaagctatagct 185
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 377 aaaagtatgggaaaatcaacaaagtggaaataaacacatgcatgataagaagctatagct 318

                                                                       
Query: 186 ctgaaaggaaaaatgttacaaataagattataaaggcctgcagcagttttcaaatgtttg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctgaaaggaaaaatgttacaaataagattataaaggcctgcagcagttttcaaatgtttg 258

                                                               
Query: 246 aacaatgttaaatcatttttattaaaatacaaggatagtatttaagttaaca 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aacaatgttaaatcatttttattaaaatacaaggatagtatttaagttaaca 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)