Query= MSMg01no086_n06.b1 MSMg01no086_n06.b1 CHROMAT_FILE:
MSMg01no086_n06.b1 PHD_FILE: MSMg01no086_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:43 2005
(323 letters)
>mm_chr3_65054047_65054769
Length = 723
Score = 588 bits (304), Expect = e-172
Identities = 316/324 (97%), Gaps = 8/324 (2%)
Strand = Plus / Minus
Query: 4 ggaattcagaagtca----tttccgtctttgtgtatgccaaggagaggactagtgggtga 59
||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggaattcagaagtcagaact----gtctttgtgtatgccaaggagaggactagtgggtga 468
Query: 60 aggtcctggagagcctcaggaaaggataccaaccgtgtgaccaggcacgttgaatgtact 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aggtcctggagagcctcaggaaaggataccaaccgtgtgaccaggcacgttgaatgtact 408
Query: 120 gactgtgctgtgttggagacggggagcccgtggtcatgttttcctcacagctcatgctga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gactgtgctgtgttggagacggggagcccgtggtcatgttttcctcacagctcatgctga 348
Query: 180 gttgatttatttcacagtaaatgggttatagtaagcagaacacatttctgggttctgtaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gttgatttatttcacagtaaatgggttatagtaagcagaacacatttctgggttctgtaa 288
Query: 240 accactctaaccaatctgatcacaagaaagggcttggggatctcttacttgtagccaagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 accactctaaccaatctgatcacaagaaagggcttggggatctcttacttgtagccaagg 228
Query: 300 tgaacataggctgtgagtaacctg 323
||||||||||||||||||||||||
Sbjct: 227 tgaacataggctgtgagtaacctg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_n06.g1 MSMg01no086_n06.g1 CHROMAT_FILE:
MSMg01no086_n06.g1 PHD_FILE: MSMg01no086_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:43 2005
(353 letters)
>mm_chr3_64913828_64914580
Length = 753
Score = 625 bits (323), Expect = 0.0
Identities = 343/351 (97%), Gaps = 4/351 (1%)
Strand = Plus / Plus
Query: 1 tcaggtgtttgctttgaaattagccttttgtggggggagagctgaaaagggccaagctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggtgtttgctttgaaattagccttttgtggggggagagctgaaaagggccaagctgc 260
Query: 61 tgtgcatgcacaagtgcgatctttaagatgtggcccatttctttatattctaagtgttac 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tgtgcatgcacaagtgcgatctttaagatgtggcccatttttttatattctaagtgttac 320
Query: 121 gaacaccttaggaccataatgagttccagagagcggagaaaacacacctaagagctagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaccttaggaccataatgagttccagagagcggagaaaacacacctaagagctagga 380
Query: 181 actcttttctactaggacagtttgtcaagagcagaagtgtttgtcctgcttgatgcacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcttttctactaggacagtttgtcaagagcagaagtgtttgtcctgcttgatgcacag 440
Query: 241 gctgtcgattctacgcttatgcttttcagaatagtttcccatcccacgctgctctcttcc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 gctgtcgattctacgcttatgcttttcagaatagtttcccatcccacgctgcactcttcc 500
Query: 301 ctt--acccagaccgagggaacatgctaagcccagctcttattaaggaagg 349
||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ctttgag--agaccgagggaacatgttaagcccagctcttattaaggaagg 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
