BAC Information

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BAC

Clone NameMSMg01-087A14
Chromosome3 (Build37)
Map Location 74,842,757 - 74,882,385
singlet/doubletdoublet
Overlap geneBC050789
Upstream geneLOC619764, LOC667434, LOC100041551, EG667459
Downstream geneSerpini2, Wdr49, Pdcd10, Serpini1, Golph4, Fstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087A14.T7 (MSMg01no087_a14.b1)MSMg01-087A14.TJ (MSMg01no087_a14.g1)
ACCAG306181AG306182
length727697
length of high quality
(start - end)		414 (67 - 480)628 (70 - 697)
definitionCHROMAT_FILE: MSMg01no087_a14.b1 PHD_FILE: MSMg01no087_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:00 2005CHROMAT_FILE: MSMg01no087_a14.g1 PHD_FILE: MSMg01no087_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,881,972 - 74,882,385)(74,842,757 - 74,843,384)
sequence
TCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTCTACACCCAACACATCATTGAAATGCAGCAATCAAAATGAG
AGGCCAAACTTGGGAAATTCAAAAACTGCAAAGGAACCACTGGTAAATAC
CTATTATATTTACTGCATTAATAGTTTATAAGGATATTCTTGAGAAAATG
ATGTTACAGCATAATACATACTAAAAGGTTATTTTCTACTTAGATTAAAG
TACTGCCGCTTAAGGTGATAGCTAAAGAATGACTCATATTGAAACAGGCA
TTTCTTATAAGATAAATGTCATTTTAACATGCATTTTTCTGTGACAAATG
ATACTAGAGAAACACCTCATTGATATATCAAGAATAATGGTGCTTTTGCA
AATAAATTTACAATTGCAGAATAGAGTGTCATTCTGATATATATATATAT
ATTATATATAAAATGTTTGTGTGTGTGGTGTGTNCCCCTTTCTCTCTCCT
CCCTTTTCCCTTTTTTCCCTCTTCTTTCCCTCTTTCCCCCCATACCATTT
ACCACTCCATATTTCAACCCCTCCCCCTCATCCTATTTTATCCATTTTTT
TCTCCTCTTTTCTTCCCTCTCTTTTATTCTCCCTTTTTTTCCCCCCCCTC
TACCCCCTCCTTTCACTCCTCTTCCTCCCCTCACCCCTTTATTCCCTTTC
TCTTTCTCCCTCTCCTTCTCTATACCC

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACACGCGAAATTCTCTGTAAGCCAGCTGGAAAGGGAATGC
AAATGCAAAGTGGGCTTTCCTGCCTTTCTTTTACTTGTAAATCCTGCTTT
ATTTCATGCGTCCACCTATGCTTTTAGTATAAACTTGTTTTGTGAAATGA
TAAGCAGACATATTTAGTTTGGACTTCAGTAATGTTCAGGGGGGAAATGA
CCAATTCCATACCCTTCCTCTTTTAAAAGTGTTATTTGTATTGAAATGCA
AACAATCCAAGAGCTCTTGTAAATAATTTTCCCTTTCTGAAAGATTTGAG
TTACATACTCTTAATTTCCTTTGAGCATGAGACTTCAAATGAATCTGAGA
GACTTATAATTTTGAATTTATTTTCTTATTTCTAAAGCTGCCAGAGCCAC
CAATAGCCAAATTTATCTCTTTGTTGAAACATTTGCCAATTTGAGCTATG
TATCTTTTAAATTGATGCTCATGCTCAATGAAGTGTAAAATTGAGCAAAT
TAAAATATTGGGCCAGGCGTTGTGGCACATGCCTTTAATCCCAGCACTCG
GGAGGCAGAGGCCGAAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAA
AGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTATCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_a14.b1 MSMg01no087_a14.b1 CHROMAT_FILE:
MSMg01no087_a14.b1 PHD_FILE: MSMg01no087_a14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:00 2005
         (414 letters)



>mm_chr3_74881816_74882629
          Length = 814

 Score =  777 bits (402), Expect = 0.0
 Identities = 411/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacacatcattgaaatgcagcaatcaaaatgagaggccaaacttgggaaattcaaaaac 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 570 caacacatcattgaaatgcagcaatcaaaatgagaggtcaaacttgggaaattcaaaaac 511

                                                                       
Query: 61  tgcaaaggaaccactggtaaatacctattatatttactgcattaatagtttataaggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgcaaaggaaccactggtaaatacctattatatttactgcattaatagtttataaggata 451

                                                                       
Query: 121 ttcttgagaaaatgatgttacagcataatacatactaaaaggttattttctacttagatt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ttcttgagaaaatgatgttatagcataatacatactaaaaggttattttctacttagatt 391

                                                                       
Query: 181 aaagtactgccgcttaaggtgatagctaaagaatgactcatattgaaacaggcatttctt 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 390 aaagtactgccgcttaaggtgatagctaaagaatgactcatatcgaaacaggcatttctt 331

                                                                       
Query: 241 ataagataaatgtcattttaacatgcatttttctgtgacaaatgatactagagaaacacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ataagataaatgtcattttaacatgcatttttctgtgacaaatgatactagagaaacacc 271

                                                                       
Query: 301 tcattgatatatcaagaataatggtgcttttgcaaataaatttacaattgcagaatagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tcattgatatatcaagaataatggtgcttttgcaaataaatttacaattgcagaatagag 211

                                                                 
Query: 361 tgtcattctgatatatatatatatattatatataaaatgtttgtgtgtgtggtg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tgtcattctgatatatatatatatattatatataaaatgtttgtgtgtgtggtg 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no087_a14.g1 MSMg01no087_a14.g1 CHROMAT_FILE:
MSMg01no087_a14.g1 PHD_FILE: MSMg01no087_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:00 2005
         (628 letters)



>mm_chr3_74842557_74843584
          Length = 1028

 Score = 1160 bits (600), Expect = 0.0
 Identities = 621/628 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctctgtaagccagctggaaagggaatgcaaatgcaaagtgggctttcctgcctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctctgtaagccagctggaaagggaatgcaaatgcaaagtgggctttcctgcctttct 260

                                                                       
Query: 61  tttacttgtaaatcctgctttatttcatgcgtccacctatgcttttagtataaacttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttacttgtaaatcctgctttatttcatgcgtccacctatgcttttagtataaacttgtt 320

                                                                       
Query: 121 ttgtgaaatgataagcagacatatttagtttggacttcagtaatgttcaggggggaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ttgtgaaatgataagcagacatatttagtttggacttcagtaacgttcaggggggaaatg 380

                                                                       
Query: 181 accaattccatacccttcctcttttaaaagtgttatttgtattgaaatgcaaacaatcca 240
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 accaattccataccgttcctcttttaaaagtgttatttgtattgaaatgcaaccaatcca 440

                                                                       
Query: 241 agagctcttgtaaataattttccctttctgaaagatttgagttacatactcttaatttcc 300
           |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagctcaggcaaataattttccctttctgaaagatttgagttacatactcttaatttcc 500

                                                                       
Query: 301 tttgagcatgagacttcaaatgaatctgagagacttataattttgaatttattttcttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgagcatgagacttcaaatgaatctgagagacttataattttgaatttattttcttat 560

                                                                       
Query: 361 ttctaaagctgccagagccaccaatagccaaatttatctctttgttgaaacatttgccaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctaaagctgccagagccaccaatagccaaatttatctctttgttgaaacatttgccaa 620

                                                                       
Query: 421 tttgagctatgtatcttttaaattgatgctcatgctcaatgaagtgtaaaattgagcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgagctatgtatcttttaaattgatgctcatgctcaatgaagtgtaaaattgagcaaa 680

                                                                       
Query: 481 ttaaaatattgggccaggcgttgtggcacatgcctttaatcccagcactcgggaggcaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaaaatattgggccaggcgttgtggcacatgcctttaatcccagcactcgggaggcaga 740

                                                                       
Query: 541 ggccgaaggatttctgagttcgaggccagcctggtctacaaagtgagctccaggacagcc 600
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggcagaaggatttctgagttcgaggccagcctggtctacaaagtgagctccaggacagcc 800

                                       
Query: 601 agggctatacagagaaaccctatcttga 628
           ||||||||||||||||||||||||||||
Sbjct: 801 agggctatacagagaaaccctatcttga 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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