BAC Information

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BAC

Clone NameMSMg01-087B17
Chromosome3 (Build37)
Map Location 26,238,476 - 26,238,724
singlet/doubletsinglet
Overlap genenone
Upstream geneNlgn1, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B17.T7 (MSMg01no087_b17.b1)MSMg01-087B17.TJ (MSMg01no087_b17.g1)
ACCAG306230AG306231
length705718
length of high quality
(start - end)
249 (67 - 315)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no087_b17.b1 PHD_FILE: MSMg01no087_b17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:06 2005CHROMAT_FILE: MSMg01no087_b17.g1 PHD_FILE: MSMg01no087_b17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCGCGGAA
TTCACACTTTTCCATAATTCTTTTGTTTATTTTTGCAATAACTTCATAAT
TAACTTCCTTGATTTGATGTTTTCCTCTCTTATTGTTAGCATTCACTATA
CAATTGTGACTATACAACTTGAGTTTCTGAAGGATCAGGTCCAAATGTCA
TTGTTTGATACACAAGTCTCCTCATTACCTTTTTCTTTTTACATACATGT
TTATTTTTGACATTTCTTTCCACACCTCCTCATGATTCAGATAAACTACT
TGTCACTAAGAATACATCTGACTCTTTGGTGAGGCAATGTCTTCATGTGT
TTCACTCTTTTCCTTACAATGCTCTAAGGAACATATTTGCACTGTGCATC
ATGTACTCTAGATATGATCCTCCTTCAAAGTCTGCCAGCCTTTAAGTGGG
AAGTGGGCATGTCTTTTAATCTTACAGTATGTACAATACTAACTCTACAG
AGGAACTCAAAAGGTTGGTGATTAAGAACTCACTTAACTAGATTACCATA
ACACTACTTGGATCCTGTATGTAGAATTTACATGCAACTGACATGGTGCA
ACGAATATAATGCTTCTAGGACTCACACGTGTAGTGACATGATCTATTAT
GACCCAATTATTTACTAGCGTCCTCCCACTTCATTTCATACATAGCAATT
CTCTA
ACAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGAGCACTGTTAGTGAAAGTGAAA
ATTATTAAGTCATTAAAAAGAACAGTAAGAAGATTCATCAAAAGCCACAT
GGTACTGATAGCTCTGTATTTCCAAAGGAAATAAAATTATCACATAAAAA
AACAACTTTACTTTCTCATACTTTTATAGCATGAGTCTCTGTAGCCAAGA
TAGAGAACTGACATACTCATTCAGTGATGGATGAAGGCCTTAAAGAAGAG
GTGGGGAGCAACAGAGTCAACAGGCCAGACCCCCTGAAGTTCTCGGGGAC
TGTACCACCTACCAAAGAGCACCCTGGAGGGACCCACGGATCCGGCCGCA
TTTGTGACAGACAATGACCTTGTTGGACATCAGTGCGAGAAGAGGCCCTT
AGATCTGAGGGCTTTTGATGTCCCATAGTAGGGAAATGCCAGGGTGGCAA
GATGGGAGGCGGCTAGGTGTTTATTACCCCCCCTATTATTTCAATTCCCT
TCCCCTTTTCTTTAACTACCTTTCCCCCCCCCCTTCCCATTTACCCCCCC
AAACTCTACTCCCCTCTATATCTCTCCCCCCCCTCCCCAACCCATCCCTA
TCCCTCTCCCTCAATTAAAAAAAACCCTTTCCCTCTCCATATTATTACTG
CCCTCTCTCTTTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b17.b1 MSMg01no087_b17.b1 CHROMAT_FILE:
MSMg01no087_b17.b1 PHD_FILE: MSMg01no087_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:06 2005
         (249 letters)



>mm_chr3_26238276_26238924
          Length = 649

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttttgtttatttttgcaataacttcataattaacttccttgatttgatgttttcct 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 449 attcttttgtttatttttgcaataacttcatatttaacttccttgatttgatgttttcct 390

                                                                       
Query: 61  ctcttattgttagcattcactatacaattgtgactatacaacttgagtttctgaaggatc 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ctcttattgctagcattcactatacaattgtgactatacaacttgagtttctgaaggatc 330

                                                                       
Query: 121 aggtccaaatgtcattgtttgatacacaagtctcctcattacctttttctttttacatac 180
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 329 aggtccaaatgtcattgtttgataggcaagtctcctcattacctttttctttttacatac 270

                                                                       
Query: 181 atgtttatttttgacatttctttccacacctcctcatgattcagataaactacttgtcac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 269 atgtttatttttgacatttctttccacacctcctcatgattcagataaactactcgtcac 210

                    
Query: 241 taagaatac 249
           |||||||||
Sbjct: 209 taagaatac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)