GGCCCCGNNGTCTGNTTTTTCGTTGCTTTCGCCTTTCCCCCTTGGNCCGN
CCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATTGCTCAAAGTATCTAGGTAAAGGTATGCACAATTATGTGG
AGCTAATGTGTGAATATTTGAAATAAACTGACTACATTTTAAATTATTAA
TGGTTGATTTTTATTTATAGAATTTTCTACGTAATTGTTAGATTAGGTTG
CATGGCAGCATTATGTTTGTCACTATCAAGAATGCACAAGCATGATCTCT
AGCTTTTAATCTTGATATTATTATATATCAAAAACTATTTACAGTGAATA
TAAGTTATGCATTCAAAATAGACTGTAGTAAAGTATATTTTATCAGAAAA
ATAAAAATGTAATACAAGGTATTACTGCTGTCCTTTATTGAGTTTTAATG
GATATAGAATTTACATTTTTAACTCCACCAAATATATGTTCAGTTTTCAT
GTGTCTATTAATGACAGATATAAGCCTGTTCTTTTGATCAGTTTACCATC
TTCTATTAAGCATTATGCTATGTCCACTCTTTCATTGCTTTCCATGATTT
CACTAACCCCCTACTTTTAGTATTGCAAGTCCTGTGAATCATTGCAAGAA
TCTAACTGATCCATTCCTATTATTAAGTTCCTGTTTTTCCTTGCCTCACG
TTACTATTCCTTTTTCGATCACTTCTAATTATCTGCACATTCCGCTCTGA
ATCGTTTATAAATTAAGTCTATAACTTTCCTTACGCTTCCTCTTTTTGTT
CACTC

TCTTTTTTCTTCCGCTCTCTTTTCCTTTCTTCNNNTCNCNTACATCTNNN
ATATCTATGAAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAACTCACAGTATCATAGAG
TAAGAACTGTTAGCATGCTTGTTACATACTTCCGCTTCTTGATTTTGAGA
AGAATGGATTCCAACCCTTGATTAATTAGGTATTTTGAATGACTCAGGTA
AGCTGCTGAGAGTTTGCTTACTCATTTTTTAATCACTTAATTGTTTTATT
TATTTACATTCCAAATGCTGCTTCTTTTAAAAATCTCCCCTCCTGTCTGT
CTCTTCCCATACCTCATCCTGCCCACTCTTCTCATTTGCCTCTCCTCCTT
CCCTCTACGCTGCCCCACCACATTTTTTTTTCCCACCCCCCCCCAAGCTA
TTGTTTCTTATAATATATGTCATGCCACCCTTCTATTCACAAAAATAACT
TATAGCTGTCTGCTGGTCTCTCCTACTTGTCTTATAATTCTCGTGTTAAG
TACATGAGTTTTGTTCGACCTATCATTCCTTTTCTCTTGCTTTACCTTCC
TTATTTTCCCCTTTTTTCGTTGCCTTTCTTCCCCTCTTTTCCTTTTATAG
CATATACTATTATCCTTACATTTCATGGTATACCTTGTTCCATTCGAACC
TAAACCCAACCTTTTTTTTCTTCTCCTCCTTTCTCATATTGCTCTTCCCC
CTTCTCTTTTTATTCCATCTCCCCTTTCTTTTACCCCCTTTTAACCCTTC
CTATTTCCTCCCCCTATCTTTTCCCTTCCTTATTCT

Query= MSMg01no087_l12.b1 MSMg01no087_l12.b1 CHROMAT_FILE:
MSMg01no087_l12.b1 PHD_FILE: MSMg01no087_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:56 2005
         (226 letters)



>mm_chr3_71771365_71771990
          Length = 626

 Score =  404 bits (209), Expect = e-117
 Identities = 221/225 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtaaaggtatgcacaattatgtggagctaatgtgtgaatatttgaaataaactgactac 60
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 201 ggtaaaggtatgcaaaattatgtggagctaatgtgtgaatatttgaaataaactgaatat 260

                                                                       
Query: 61  attttaaattattaatggttgatttttatttatagaattttctacgtaattgttagatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaaattattaatggttgatttttatttatagaattttctacgtaattgttagatta 320

                                                                       
Query: 121 ggttgcatggcagcattatgtttgtcactatcaagaatgcacaagcatgatctctagctt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttgcatgacagcattatgtttgtcactatcaagaatgcacaagcatgatctctagctt 380

                                                        
Query: 181 ttaatcttgatattattatatatcaaaaactatttacagtgaata 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatcttgatattattatatatcaaaaactatttacagtgaata 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no087_l12.g1 MSMg01no087_l12.g1 CHROMAT_FILE:
MSMg01no087_l12.g1 PHD_FILE: MSMg01no087_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:56 2005
         (196 letters)



>mm_chr3_71876182_71876777
          Length = 596

 Score =  364 bits (188), Expect = e-105
 Identities = 194/196 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcttgattttgagaagaatggattccaacccttgattaattaggtattttgaatgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cttcttgattttgagaagaatggattccaacccttgattaattaggtattttgaatgact 337

                                                                       
Query: 61  caggtaagctgctgagagtttgcttactcattttttaatcacttaattgttttatttatt 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 336 caggtaagctgctgagagtttgcttactcatttcttaatcacttaattgttttatttatt 277

                                                                       
Query: 121 tacattccaaatgctgcttcttttaaaaatctcccctcctgtctgtctcttcccatacct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 276 tacattccaaatgctgcttcttttaaaaatctcccctcctgtctgtctcttctcatacct 217

                           
Query: 181 catcctgcccactctt 196
           ||||||||||||||||
Sbjct: 216 catcctgcccactctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)