BAC Information

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BAC

Clone NameMSMg01-087N17
Chromosome3 (Build37)
Map Location 12,681,613 - 12,681,890
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798
Downstream geneEG668033, LOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087N17.T7 (MSMg01no087_n17.b1)MSMg01-087N17.TJ (MSMg01no087_n17.g1)
ACCAG306765AG306766
length713731
length of high quality
(start - end)
552 (66 - 617)283 (71 - 353)
definitionCHROMAT_FILE: MSMg01no087_n17.b1 PHD_FILE: MSMg01no087_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:08 2005CHROMAT_FILE: MSMg01no087_n17.g1 PHD_FILE: MSMg01no087_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTACTTAGCAATCTTGAATAGGAATGGCTGAGAGGCACCTAAAGAAA
TGCTCAACATCCTTAGTTATCAGGGAAATGCAAATCAAAATGACCCTGAG
ATTCCACCTCACACCAGTCAGAATGTTTAAGATCAAAATTAAGGTGACAG
AAGATGCTGGCAAGGATATGGAGAAAGAGGAACACTCCTCCATTGCTGGT
GGGACTGCAAGCTTGCACAACCATTCTGGAAATCTGTTGCGCCCAACCTC
AGCCAGCAAGGAGACACAACATGGTCAGATTCTTCTCAACAGCCTTTATT
GCAGGAACGCCTTCATGCTGCTATGGGGACCCCAGGAACCCAGGGAGGTC
TGTTTATATACTCTCCAGCATAGGGAAAGGCTTCGTGGCCCCCTGGGATT
GGTCAGTCTGCCAGCACCTAATTTGCATGCACCCACTCGGGAGGGGTTGG
TGCCAGACTCGGACTTACACCTGCGCTGATGTTGTTTATGACAACAGCAC
ACCTAGCGCCCGGCCCCATCTTAGAGTTGGCTTCCTACATCTCCCCCTTT
TTTGTTTAATAATATGATGTTGGACTAGGTCTGGGCAAATCTGTCCATTG
GTCACGGTTCCTGTCTTAAGTCGATCCTGTATTCATCTCTCTCCCTATAT
TTTTTTCTCCCCT
ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTATTTTTGGCATCTTGTTGCAGAGATCAG
AAAATACATTTATTTAGAAAAAACTCAGGTAGTGATCTTGAGAACATTAA
AGTGAACAGAGAAAAGCCAACCTATATTCCTTTTACTTTTGTCAGGAAAA
AAATTGAGTTTAATTCCTCTCATAAAATGATGTATAGATGTGACAACCAG
ATGTGATGACTACAAGATTATTAAAACATTTATTGATTTTGTTTGTTTGT
TTGTTTTGTTTGTTTGTTTGGTTTTCTTTTTTTTTTTTTTTGCAATTGGC
CATGTTTTTGACTCCCCCCTCCTCTCTCTCACCCACTGGTTTTTCAACAA
GCTGTCACTGTCTGTGAGAGACAAGAAACTATTGCATTAGACCCCCTATA
CTTTCATTTACCTACCTATTTACTTATTTACTCATTCATATTACATATTT
TCCCTCATAATTTCCACTTCTACTTCTATTTTAATTACCTACTTTTTTCT
TTTAACTCTCCCCCGCCTTTCTTTTCTTCTATTCTCCACCCCCTTCCTTT
ATGCACCCTTCATATTCCCCCCCCCTTGTATCTCGTCCCTCCCTCTCCCA
CTTCTTAGCCTCCTTTTTTTTCCATTTAATCCCATAACCCCTCTTCCCAC
CTTAATTTATTACACACCCCTTCCTCCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_n17.g1 MSMg01no087_n17.g1 CHROMAT_FILE:
MSMg01no087_n17.g1 PHD_FILE: MSMg01no087_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:08 2005
         (283 letters)



>mm_chr3_12681413_12682096
          Length = 684

 Score =  499 bits (258), Expect = e-146
 Identities = 275/284 (96%), Gaps = 7/284 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatttttggcatcttgttgcagagatcagaaaatacatttatttagaaaaaac-tcagg 59
           ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||
Sbjct: 201 ttatttttggcatcttgttgcagagattagaaaatacatttattcagaaaaaacatcagg 260

                                                                       
Query: 60  tagtgatcttgagaacattaaagtgaacagagaaaagccaacctatattccttttacttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgatcttgagaacattaaagtgaacagagaaaagccaacctatattccttttacttt 320

                                                                       
Query: 120 tgtcaggaaaaaaattgagtttaattcctctcataaaatgatgtatagatgtgacaacca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcaggaaaaaaattgagtttaattcctctcataaaatgatgtatagatgtgacaacca 380

                                                                       
Query: 180 gatgtgatgactacaagattattaaaacatttattgattttgtttgtttgtttgttttgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgtgatgactacaagattattaaaacatttattgattttgtttgtttgtttgttttgt 440

                                                       
Query: 240 ttgtttgtttggttttctttttttttttttttgcaattggccat 283
           ||||||||||||||||||||||||||      ||||||||||||
Sbjct: 441 ttgtttgtttggttttcttttttttt------gcaattggccat 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space:   184950
Effective search space used:   184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)