BAC Information

Click to search

BAC

Clone NameMSMg01-088A20
Chromosome3 (Build37)
Map Location 19,070,911 - 19,071,242
singlet/doubletsinglet
Overlap genenone
Upstream geneCyp7b1, LOC622921, LOC100040153, Armc1
Downstream geneMtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088A20.T7 (MSMg01no088_a20.b1)MSMg01-088A20.TJ (MSMg01no088_a20.g1)
ACCAG306910AG306911
length679773
length of high quality
(start - end)
511 (46 - 556)420 (123 - 542)
definitionCHROMAT_FILE: MSMg01no088_a20.b1 PHD_FILE: MSMg01no088_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:23 2005CHROMAT_FILE: MSMg01no088_a20.g1 PHD_FILE: MSMg01no088_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGACCGCGGATTCCCT
AATTGCCCATTCTCTGGGTTTACTCGGACACTCCTCCTGTACAACCAGTA
TGCTCTATGAGGCCTTTGGCAAAAGCAGGTGTATCAAGCATGTGGAATGT
ACCTGTAATCTCAGAACTCCAGAGGTTGATCAGGAGGATTCAAGGTTACC
TGAACTTCATGAAGAAATCCTAACTCAAAAAGAAAGGGGGGGGGGGGCAA
GTGACAACTTAATGTTTCTGCTGCCTGAGGTAGCATTTGAGTGGGGCTGA
CAAGCAGCTGACCTAAAGCTTGAAAGGAAACACTGGGCAGAGAGGCAACT
ATGTAAGCTTTGACACTGTCATAAACATCTTTGCAAGCATGAAAATGATG
AGTGGACCATGTCTCCAAGCAGCGCTGTGCCACACATCCAAAGGACATCA
GACCAGAATCTTTACCCTGGAGAAGGTTGAGGAGAAAATGAAGAAAGACT
AAGCACACTTGTAAATTATCTGCCACAAAAGTCAATGTATGCTCCAACAC
ACACACTCACACACAAACACATACACTCTCACATACCACACACCAAACAC
TACACACTTATGCAAAGCTCACTCACACACTCATGTACCTACCATACAGA
AACACACACACACATATACAACACCCACA
NNNNNNNNNNNNCCCCNNNNNCCCCCCCCCCNCCCCCCCTGTCTTANCAA
CGATGATGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGAGATCTATCTGCCTCTGCCTCTGA
AGTTCTATGATATAATGTATATACCACCACACCTGGCTAAAGATTCCTTA
TGATGATGGTGGTGATGGTTGCTGCTGCTGATTTTTATAATAATAATAAT
AATAATTATAGTTACGCTTGTGCCTGTGAATATCTGCAGAAGCAAGAAGA
GGCTTGTTGAATTCCCCTGGAGCTGGAGTTACAGGCTGTTGTGAGCCACC
TAACATAAGTGCTCTTAATTACTGATCCATCTCTCCAGCCCCAGAATCTT
TAGTCTTCGGGTCACAATTGCTGGGTCAAAGTGTATTATTTTCTGGAATA
GACTTTGATTCACTGCTCTTTACAGTGCTGTGCAAGTTTACATCTTCACA
GAACTGAATGGGAGTCCTTGCCCTGCTCACTGTACCTGCTGTCATCATGG
TGGGACCTAGACTTGGCCATCAGATATCCAAGGGATTGCTCTTACTTTTA
CATTACATCGAATTTCCCGATAGACATGAGTTTGCCTTCCTTTTCAGGGT
TTCTGGCTACTTTTTTCTTTTTATGGCAAACATTATAGGGTTTTTATTTC
TGTTTTTGTCTCTATCAGTAATAATCCAGATTATGTTGTCTACTGACAAC
CTTTTTTGCATTTTTAAACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_a20.g1 MSMg01no088_a20.g1 CHROMAT_FILE:
MSMg01no088_a20.g1 PHD_FILE: MSMg01no088_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:23 2005
         (420 letters)



>mm_chr3_19070441_19071260
          Length = 820

 Score =  572 bits (296), Expect = e-167
 Identities = 319/332 (96%), Gaps = 9/332 (2%)
 Strand = Plus / Minus

                                                                       
Query: 98  tgctgctgctgatttttata---------ataataataataataattatagttacgcttg 148
           ||||||||||||||||||||         ||||||||||||||||||| |||||||||||
Sbjct: 802 tgctgctgctgatttttataataataatgataataataataataattagagttacgcttg 743

                                                                       
Query: 149 tgcctgtgaatatctgcagaagcaagaagaggcttgttgaattcccctggagctggagtt 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgcctgtgaatatctgcagaagcaagaagaggcttgttgaattcccctggagctggagtt 683

                                                                       
Query: 209 acaggctgttgtgagccacctaacataagtgctcttaattactgatccatctctccagcc 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 acaggctgttgtgagccacctaacataagtgctcttaattactgatccatctctccagcc 623

                                                                       
Query: 269 ccagaatctttagtcttcgggtcacaattgctgggtcaaagtgtattattttctggaata 328
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 622 ccagaatctttagtcttcgggtcacaattgctgggtcaaagtgtagtattttctggaata 563

                                                                       
Query: 329 gactttgattcactgctctttacagtgctgtgcaagtttacatcttcacagaactgaatg 388
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 562 gattttgattcactgctctttacagtgctgtgcaaatttacatcttcacagaactgaatg 503

                                           
Query: 389 ggagtccttgccctgctcactgtacctgctgt 420
           ||||||||||||||||||||||||||||||||
Sbjct: 502 ggagtccttgccctgctcactgtacctgctgt 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)